Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1018 105 8e-18 >seq1018 Length=294332 Score = 105 bits (116), Expect = 8e-18 Identities = 256/379 (68%), Gaps = 18/379 (5%) Strand=Plus/Minus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||||||||| || || || || || || || |||| ||||||||| || || || Sbjct 234736 CTGACGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGT 234677 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 10899 || || | |||| || || || |||| ||||| |||||||| ||||||| || Sbjct 234676 GGCGGCAACAACAATAATTCCGGT---GTTACCCTCAAATCCATCCATTTCAGTCAGAAG 234620 Query 10900 TTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTG 10956 || || | |||||||| | || ||||| || || || ||| | || | || Sbjct 234619 CTGGTTCAGAGTTTGTTCTCTCTCGTCATT-GCCTCCA--CCGATACCGGTACCCCTCTG 234563 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAAC 11016 | | |||||||| ||||| ||||| | ||| || || || || |||||| ||| | Sbjct 234562 CCTTCCGACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTCCTTGGC--C 234505 Query 11017 TTCA--AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTG 11074 ||| |||| ||| | |||| || || ||||| |||||||||||||| || | Sbjct 234504 TTCTTGAAGAGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCA 234445 Query 11075 GCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 | | ||| |||| || || || || | ||| || || ||||| |||||| || Sbjct 234444 GAACCAGAA-ATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAG 234386 Query 11134 GGTCTTCCCCGTCCCAGGT 11152 ||||| || || || ||| Sbjct 234385 AGTCTTTCCTGTTCCGGGT 234367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597322709351960