Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq3782 116 1e-21 >seq3782 Length=1063 Score = 116 bits (128), Expect = 1e-21 Identities = 270/407 (66%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 12776 TGGGATGGCTCGGGCGGCACGTTCGTTGACGGCGACGGCAACTTCTACAGGCCGGCGCAG 12835 |||||||| || || ||| | ||||| |||| || || || ||||| || | || ||| Sbjct 15 TGGGATGGTTCCGGTGGCGCCTTCGTCGACGATGAGGGAAATCTCTACCGGGCCGCACAG 74 Query 12836 TTCACGGAGGACGCGCTGCAATCGCTCGAGGCGGCCATCAACGGCGAGGCTTACACGCTC 12895 || || || || ||||| || ||||||| || |||||||||||||| | || ||| Sbjct 75 TTTACCGACGATGCGCTTCAGAACATCGAGGCTGCGATCAACGGCGAGGCCTTTACCCTC 134 Query 12896 GCGCTGTCGCTGATTTCGGTTAGCCAGTCGGCTGCGGATAGCATCTGGGAATATGACGAG 12955 |||| ||||| || | | || | | ||| |||||||| || |||||| Sbjct 135 TCGCTCTCGCTCATCAACATCGACACCTCCACCGGAGATGCGATCTGGGATTACGACGAG 194 Query 12956 ACGGCCAGCGTGCAGGGCTCGCCGTTTGTCGTGAAGTTGCAGATCCTCGACGAGGACGAA 13015 | | |||| ||||| ||| || | | ||| | || ||||| || ||||| Sbjct 195 GTATCGACCGTGGCAGGCTCTCCGGTTCTGATCAAGCTACAAGAGCTCGATGACAACGAA 254 Query 13016 CAGCCCGACAGCGATCCGATCGTGGTGTTTGCCGGCGAAATCGACAACCTCGATGTTGCT 13075 || || | |||| || ||| |||| ||||| |||||||| | | || || Sbjct 255 GAGATCGTCGGCGAACCTGAGGTGAAGTTTACCGGCACGATCGACAATATGAAGGTGACT 314 Query 13076 GACGAGTCCACGGCCGACGGCATTACGTCGGTCGTCAATCTGGAAGTCACCAACCGCTTC 13135 ||| || | | | ||| || | ||||||||||| | || ||| ||| |||| Sbjct 315 GACCAGGCAAGCGACGAAGGGTCTCAGTCGGTCGTCACCATCGAGGTCGTCAATGCCTTC 374 Query 13136 ACGCTGCGTACCGTCACCAACGGCGCGGTTCTTTCGGACGTCGACCA 13182 |||||||| |||| | ||||||||| || || || || ||||| Sbjct 375 ACGCTGCGCGTGCTCACAAGCGGCGCGGTGCTCTCCGATGTGGACCA 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192492942958658