Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq594 105 7e-18 >seq594 Length=317990 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 93966 CGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGC 94025 |||| |||| ||||||| ||||| | ||||| ||||| | || | || Sbjct 156774 CGACAGCATCGAGGGAATTTACGACACTTTGAAGGAGTGTGCTGTTGTAAGTAAGTCAGC 156715 Query 94026 GGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTAC 94085 ||||||||||| || || || || | ||||||| ||| ||||||| | || || Sbjct 156714 AGGGGGAATCGGACTCTCAGTACATAACATTCGTGCCACCGGTAGCTACATCAGAGGGAC 156655 Query 94086 CAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTA 94145 |||||| || ||||| ||| || | || ||||| || || |||||| || | || ||||| Sbjct 156654 CAATGGAACGTCCAATGGCATCCTGCCGATGCTGCGAGTTTTCAACGACACCGCTCGCTA 156595 Query 94146 CGTGGACCAGGGTGGTGGGAGGAGGAAGGGT 94176 ||| ||||| |||||||| | ||| || ||| Sbjct 156594 CGTAGACCAAGGTGGTGGCAAGAGAAAAGGT 156564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494697616626520