Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_011269.1 Length=154017 Score E Sequences producing significant alignments: (Bits) Value seq1013 129 6e-25 >seq1013 Length=3715 Score = 129 bits (142), Expect = 6e-25 Identities = 119/149 (80%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 112989 TGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACC 113048 |||||||| ||||||||||| || | |||||||||||| |||||||| ||||||||||| Sbjct 1207 TGCGGCCCCGGCCGTGGCTCGGCGGCGGGCTCGCTGGTCGCCTACGTCCTGGGCATCACC 1266 Query 113049 TCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACC--GCC 113106 ||||||||||| | || | ||||| |||||||| ||| | |||||||||| | Sbjct 1267 GACCTCGACCCGATCCGGCACAAGCTGATCTTCGAGCGGTTCCTGAACCCGGACCGTGTG 1326 Query 113107 CCGACTTCCCCGACATCGACGTCGACTTC 113135 ||| | |||||||||||| | |||||| Sbjct 1327 TCGA--TGCCCGACATCGACATGGACTTC 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492700919886040