Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq3452 381 6e-101 seq1013 107 2e-18 >seq3452 Length=1961 Score = 381 bits (422), Expect = 6e-101 Identities = 343/431 (80%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 152889 TTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCGCGC 152948 |||||||| ||||||||||| || || || || |||||| ||||| || || || || Sbjct 720 TTCGAGAGGTTCACCGACCGAGCGCGACGTGTTGTCGTCCTGGCCCAGGAAGAGGCCCGG 779 Query 152949 ATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAGGGC 153008 ||||||||||| |||||||| |||||||| | || || || ||| |||||||||| Sbjct 780 ATGCTCAACCACAACTACATCGGGACCGAGCACATCCTCCTTGGCCTGATCCACGAGGGA 839 Query 153009 GAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGTGCC 153068 |||||||| ||||| |||||||| || | |||| ||| ||||||| ||||| Sbjct 840 GAGGGCGTCGCCGCGAAGGCGCTCGAGTCCCTCGGTATCGCTCTGGAGGGCGTGCGACAG 899 Query 153069 GAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTCACC 153128 |||||||||||||||||||||| || |||||||| || ||||||||||||| |||||| Sbjct 900 CAGGTCGAGGAGATCATCGGCCAGGGGCAGCAGGCCCCGTCCGGGCACATCCCCTTCACC 959 Query 153129 GACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCACAAC 153188 ||| | ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CCCCGGGCGAAGAAGGTGCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCACAAC 1019 Query 153189 TACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGCTGC 153248 |||||||| |||||||| ||||||| | ||| ||||||||||| |||||||| | | Sbjct 1020 TACATCGGGACCGAGCACATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGCGTCGCGGCC 1079 Query 153249 CAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAGCTG 153308 ||||||||||| |||| ||||| || || | | ||||| ||| ||| |||||||| Sbjct 1080 CAGGTGCTGGTCAAGCTGGGCGCCGACCTCAACCGTGTCCGTCAGCAGGTGCTCCAGCTG 1139 Query 153309 CTGTCCGGGTA 153319 |||||||| || Sbjct 1140 CTGTCCGGCTA 1150 >seq1013 Length=3715 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 110990 CTGCGGCCCTGGCCGTGGCTCCGGCGGC-GGCTCGCTGGTGAACTACCTGCTGGGCATCA 111048 ||||||||| |||||||||| ||||||| ||||||||||| |||| | |||||||||| Sbjct 1206 CTGCGGCCCCGGCCGTGGCT-CGGCGGCGGGCTCGCTGGTCGCCTACGTCCTGGGCATCA 1264 Query 111049 CCTCGCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 || |||||||||||| | || | ||| |||||||||||| | ||||| ||||| Sbjct 1265 CCGACCTCGACCCGATCCGGCACAAGCTGATCTTCGAGCGGTTCCTGAACCCGGACCG 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526571168280240