Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2625 122 8e-23 seq4017 120 3e-22 seq487 116 3e-21 seq3072 96.9 3e-15 >seq2625 Length=346021 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||||| || | ||||| || |||||||||||||| || |||||| Sbjct 281564 ATACCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCG 281505 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | ||||| || || | ||||||| |||||||| || Sbjct 281504 GCGAGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGA 281445 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||||||||| ||| | || | |||||||||| ||| Sbjct 281444 GGAATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCA 281385 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||| ||||| || | ||||| || ||||| ||||| Sbjct 281384 ACCTCCAAAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 281335 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||||||||| ||||||| || || || |||||||| || || ||| Sbjct 280424 ATACCTCCTCGCAGCCTCAACACAAGATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCG 280365 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | |||||| || ||| | ||||| || |||||||| || Sbjct 280364 GCCAGCGTGCGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCGCTGCTGGTCAGGG 280305 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT 45256 |||||||| || |||||||||||||| Sbjct 280304 GGAATGCCCTCCTTATCTTGAATTTT 280279 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 |||||||| || | ||| || || |||||||||||||| || || ||| | || | Sbjct 281780 AGCCTCAAAACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGCCAACGTCCTC 281721 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | ||| ||||| || | ||||| | ||||| || || || |||||||| Sbjct 281720 CCATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCC 281661 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || |||| | || |||| || | || | ||||| || ||| || || ||||| Sbjct 281660 TTGTCCTGAA-TCTTCGTTTTCACGTTATCAATCGTGTCAGAGCTCTCCACCTCAAGAGT 281602 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| || ||||| || || |||||||| Sbjct 281601 TATGGTCTTGCCGGTGAGGGTTTTAACGAAGATTTGCAT 281563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || ||||| || || || ||||| || |||||||||||| | ||| Sbjct 281093 CTCAAGACGAGATGGAGAGTAGACTCCTTCTGTATATTATAATCGGCCAGCGTTCGGCCG 281034 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || ||||| | ||||||| || ||||| || ||||| || || ||| Sbjct 281033 TCCTCCAACTGCTTACCTGCAAAGATCAATCTCTGTTGGTCTGGAGGAATACCCTCCTTA 280974 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || ||||| || | || | ||||||||| ||||| || | || | Sbjct 280973 TCTTGGATCTTGGTTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCCAAGGTGAT 280915 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| || ||||| Sbjct 280914 GGTCTTTCCTGTAAGCGTCTTCACAAATATCTGCAT 280879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | |||||| || ||| | ||||| | ||||| || || || || || || ||| Sbjct 280577 TCCTCTAGTTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTA 280518 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | |||||| ||| |||||| ||||| |||| Sbjct 280517 TCCTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTAATG 280458 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || |||||||| || ||||||||||| Sbjct 280457 GTTTTCCCCGTCAGAGTTTTAACGAAAATTTGCAT 280423 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAAT-CGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||| || |||||||||||||||||||||| |||| | || | ||| || | ||| Sbjct 282221 TGCAAAGTAGATTCCTTTTGGATATTATAATCCGCT-AGAATTCTTCCATCCTCGAGTTG 282163 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||||||| | ||||| | |||||||| || || || || || || ||||||| | | Sbjct 282162 CTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGAA-TCT 282104 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | || | || | || || || ||| || || ||||||| || || || | Sbjct 282103 TCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAACCTCAAGAGTAATGGTCTTACCTG 282044 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || || ||||| ||||| Sbjct 282043 TCAAGGTCTTCACGAAAATCTGCAT 282019 >seq4017 Length=874442 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 || |||||| ||||| || || || ||||||||||| ||||| ||| | || | Sbjct 473330 CCGCAACACAAGATGAAGAGTAGACTCCTTTTGGATGTTATAGTCGGCCAAAGTCCTGCC 473271 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||||| || ||| | |||||||| |||||||| || ||||||||||| || Sbjct 473270 ATCTTCGAGCTGTTTCCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 473211 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| || | || | |||||||||| ||| || || | || | Sbjct 473210 GTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAACTCTCCACCTCCAAGGTGAT 473151 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| || || ||||| ||||| Sbjct 473150 GGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 473115 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || ||||||| || |||||||| |||||||| ||||||||||| ||||| Sbjct 473797 CCACCTCGCAGCCTCAGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCC 473738 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| |||| || |||||||| | ||||||| ||||| || || ||| Sbjct 473737 AGGGTTCGTCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGGA 473678 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || ||||| || | |||||| || ||||| Sbjct 473677 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACATTGTCGATGGTGTCAGAGCTTTCGACC 473618 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || ||||| | || || || || || ||||| Sbjct 473617 TCGAGAGTGATAGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 473571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||||| || || || || || || ||||||||||| || || ||| | ||| | Sbjct 473102 CCTCAGGACGAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTCCTTCC 473043 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | || || || ||| | |||||||| ||||| || || ||||| || || || Sbjct 473042 ATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTT 472983 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| || | || | ||||| ||| ||| || || | || | Sbjct 472982 ATCTTGGATTTTAGTCTTCACATTGTCGATAGTGTCAGAACTCTCCACCTCCAAGGTTAT 472923 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || ||||| || || ||||| ||||| Sbjct 472922 AGTCTTGCCTGTCAGAGTCTTCACGAAAATCTGCAT 472887 >seq487 Length=466406 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| | ||| || || || ||||||||||| || || || Sbjct 183011 ATACCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCT 182952 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || || || ||| | ||||||| |||||| || || Sbjct 182951 GCGAGGGTACGACCATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGA 182892 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || ||||| || ||| | || | || | |||||||| ||| Sbjct 182891 GGAATGCCCTCCTTGTCCTGAATCTTAGCTTTAA-CGTTGTCGATAGTGTCGGAGCTCTC 182833 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | |||||||||||| || |||||||| || || ||||| Sbjct 182832 CACTTCCAGAGTGATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| | ||| || || || ||||||||||| ||||| || Sbjct 177265 ATACCTCCCCTGAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTATAGTCC 177206 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | |||| || |||||||| || Sbjct 177205 GCGAGAGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGCTGGTCTGGG 177146 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| |||||||| || |||| || | ||||||||| || Sbjct 177145 GGAATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCGATGGTGTCGGAGCTTTCC 177086 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || || || || || || || || ||||| Sbjct 177085 ACCTCCAGAGTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 177036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || || || ||| || |||||||| Sbjct 176326 TGAAGAGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGAGTTCGGCCGTCTTCCAATTGC 176267 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| | |||||||| || ||||| || || || || ||||| || Sbjct 176266 TTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTA 176207 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||||||||| ||| || ||||| || | || |||||||| Sbjct 176206 GCTTTCA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGT 176148 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || || |||||| Sbjct 176147 CAGAGTCTTGACGAAGATCTGCATC 176123 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || ||||||||||| || || || || ||| ||| || Sbjct 177017 CACCAAATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGGCCATCTTC 176958 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || ||| | ||||| | |||||||| || || || || || || || || Sbjct 176957 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 176898 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || ||||| || | || | |||||||| ||| || ||||| || | |||| Sbjct 176897 GATCTTGGCTTTGA-CGTTGTCGATAGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTTT 176839 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| || || || || ||||| Sbjct 176838 TGCCAGTCAGAGTCTTGACGAAGATCTGCAT 176808 >seq3072 Length=975934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||| | | |||||||| || | ||| || || || ||||||||||| || || || Sbjct 271812 ATTCCTTCCCTCAGCCTCAAGACCAAATGGAGGGTAGACTCCTTTTGGATGTTTTAGCCG 271753 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| || || ||| | || || | |||||||| || Sbjct 271752 GCCAAGGTACGACCGTCCTCAAGTTGCTTCCCAGCGAAAATTAAAAGCTGCTGGTCTGGT 271693 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| ||||||||||||| | || || | || | || | |||||||| ||| Sbjct 271692 GGAATGCCCTCTTTATCTTGAA-TCTTGGTCTTCACGTTGTCAATCGTGTCGGAGCTCTC 271634 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 || || ||||| | || || ||||| | || || |||||||| |||| Sbjct 271633 AACCTCAAGAGTGATGGTCTTACCGGTCAATGTCTTCACAAAAATCTGCA 271584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||||||||| | ||| || || ||||| |||||||| || || ||| | || | Sbjct 271572 AGCCTCAACACCAAATGGAGGGTAGATTCGTTTTGGATGTTGTAGTCGGCCAACGTCCTC 271513 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | ||| ||||| || | ||||| | ||||| || || || |||||||| Sbjct 271512 CCATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCC 271453 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || |||| | || |||| || | || | ||||| || ||| || || ||||| Sbjct 271452 TTGTCCTGAA-TCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCACCTCAAGAGT 271394 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || | ||| || || |||||||| Sbjct 271393 TATGGTCTTGCCCGTGAGGGCTTTAACGAAGATTTGCAT 271355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451979825784520