Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2878 279 6e-70 seq467 156 5e-33 seq3792 138 1e-27 seq3282 132 6e-26 seq3761 127 3e-24 seq1308 111 2e-19 seq164 109 7e-19 seq2371 105 8e-18 seq595 87.8 2e-12 seq263 87.8 2e-12 seq470 82.4 9e-11 >seq2878 Length=397857 Score = 279 bits (308), Expect = 6e-70 Identities = 346/471 (73%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| ||||||||||| ||||||||||||||||| || || | | || Sbjct 140755 TCACCATCTTCAAATAAAGTATTCTCAACAGTAGCACCGTGAATTGCGCATAAAAGAGCA 140696 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 ||||||| | || || |||||||||||||| || ||||| | |||||||| || ||| Sbjct 140695 GCACCTAAAACTCCAGCGACACCCATCATATGGAATGGGTTTAAAGTCCAGTTATGAAAG 140636 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | || || | || | || || || || |||||||| || ||||| ||| Sbjct 140635 CCTTGAAAAAAAAGAATAAATCTAAAAATTGCAGCTACACCAAAACTAGGTGCAAAAAAC 140576 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| || ||||| | |||||| || ||||| ||||| ||||| |||||||| || ||| Sbjct 140575 CAACCTGATTGTCCTAAAGGATAAATAAGAAAAACAGATACAAAAACAGCAATAGGTCCA 140516 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCG 6936 |||||||| |||||||| || ||||| | | || ||| | || | ||||| || || Sbjct 140515 GAAAACGCAATTGCATTATAAGGACGTA-ATTGAACAGATCTAGCAAGTTCAAATTGTCG 140457 Query 6937 AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCC 6996 | ||| || ||||| | |||||| || || || || || ||||||| ||||| || || Sbjct 140456 TAACATAAAGCCTATTAAGGCAAATGCACCATGAAGAGCTACAAAAGTCCATAAACCACC 140397 Query 6997 AAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGA 7056 | |||| ||| || ||||| || || ||||| || ||||||| | |||| || Sbjct 140396 TAATTGGCACCAACGAGTAAAATCACCTTGTGCTTCAGGTCCCCATAATAATAGTAAAGA 140337 Query 7057 ATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACA 7107 ||| | | | | || ||||| || ||||| ||||| | |||||||| Sbjct 140336 ATGAGCTAAACTATTTGCTGGAGTAGAAACAGCGGCAGTTAAAAAATTACA 140286 >seq467 Length=265627 Score = 156 bits (172), Expect = 5e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| | ||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||||| | || ||||| ||||| | ||||||||||||| ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || ||||| ||||| ||||| || | |||||| ||||| ||||| | ||| | | Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 211277 Query 7709 GCAGTG 7714 ||| || Sbjct 211278 GCATTG 211283 >seq3792 Length=366655 Score = 138 bits (152), Expect = 1e-27 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 |||| ||| |||| | ||||| ||||||||||| || | ||||||| |||| |||||| Sbjct 281972 TGGAGAACAGTCATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAA 281913 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 |||||||| | ||| |||| | ||| ||||||| || |||||||||||||| || Sbjct 281912 CTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAA 281853 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAA 8167 ||||| ||| ||||| ||||||||||||| ||||||| Sbjct 281852 TATGCAACAGCAATCCAAGGACGCATACCTAAACGGTAA 281814 >seq3282 Length=366234 Score = 132 bits (146), Expect = 6e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 7558 GTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTCTGC 7617 |||||| ||||| || ||||| |||||||| ||||| ||||||||||| | || || Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 7618 CCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTT 7677 ||| ||||| | ||||||||||||| |||| | || ||||| ||||| ||||| || Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 7678 GAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCC 7725 | |||||| ||||| ||||| | ||| | |||||| ||||| || || Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 >seq3761 Length=231418 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 8228 AGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGA 8287 |||| | |||||||||||||||| | ||| ||||||| |||||| |||||||| || || Sbjct 108315 AGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGG 108256 Query 8288 TAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTG 8347 |||||||| | ||| ||||| ||| | ||||| || ||||||||| |||||||| || Sbjct 108255 TAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTT 108196 Query 8348 CCATACATGAGCGAACCAGCGACGG 8372 || || | || ||||||| |||| Sbjct 108195 CCGTAAAGAAGAGAACCAGATACGG 108171 >seq1308 Length=500924 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| | ||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGA 7642 ||||| ||||||||||| | || ||||| ||||| | |||||||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGA 59770 >seq164 Length=700310 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 6268 GTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCCACTGG 6327 ||| || | ||||| || || || || ||||||| |||||||| || ||||| | Sbjct 564033 GTTTCCACGTGGCAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTGATCTTGAGC 563974 Query 6328 TGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAA 6387 ||||||||| || | | ||||||||| |||| || || || ||||| || || || || Sbjct 563973 TGCCATCCAAGCTCTAATACCTTCATTTAATAAAATATTTTTTGTATAAAAAGTTTCAAA 563914 Query 6388 CTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGC 6435 ||||||||||| ||||| | || ||||| |||||||| || || || Sbjct 563913 TTCTGGATCCTCTGCTGCACGAATTTCTTGGGAAACAAAATCGTAGGC 563866 >seq2371 Length=186017 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 8292 AGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCAT 8351 |||| | ||| ||||| ||| | ||||| || ||||||||| |||||||| || || | Sbjct 41141 AGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGT 41082 Query 8352 ACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGA 8411 | | || ||||||| || ||||||||||| |||||||| || ||||||||||| || | Sbjct 41081 AAAGAAGAGAACCAGATACAGGTTCACGGATACCGTCAATATCTACAGGAGGAGCTGCAA 41022 Query 8412 CGAAAGCGACGATGAA 8427 ||||| | ||||| Sbjct 41021 TAAAAGCAATAATGAA 41006 >seq595 Length=533780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 6308 TCATGTGGTTGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTC 6367 ||||| || ||||| | ||||||||| || | | ||||||||| |||| || || Sbjct 284184 TCATGAGGCTGATCTTGAGCTGCCATCCAAGCTCTAATACCTTCATTTAATAAAATATTT 284243 Query 6368 TTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAG 6427 || ||||| || || || || ||||||||||| ||||| | || ||||| |||||||| Sbjct 284244 TTTGTATAAAAAGTTTCAAATTCTGGATCCTCTGCTGCACGAATTTCTTGGGAAACAAAA 284303 Query 6428 TCATAAGC 6435 || || || Sbjct 284304 TCGTAGGC 284311 >seq263 Length=1363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 80684 AGAATGTTGAACCCTTCGGCATATGCTTGCATTATACCGTATTCAACTCCGTTATGAACC 80743 |||| |||||| ||||||||||| || ||||| || |||||||| | |||||||| ||| Sbjct 1174 AGAACGTTGAAGCCTTCGGCATAGGCCTGCATCATGCCGTATTCGATGCCGTTATGGACC 1233 Query 80744 ATCTTGACAAAGTGCCCTGCTCC 80766 |||||||| ||||| || || || Sbjct 1234 ATCTTGACGAAGTGACCGGCGCC 1256 >seq470 Length=504015 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 ||||| || | || |||||||| | ||| || |||| ||||||||||| || | ||| Sbjct 204118 GTGGGGTACGCAATGCAGGTCAGGACGAATCCCTCATCCATCTGGTCATCGTCCAAGAAG 204177 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || ||| || ||| || | | ||| || ||||| ||| || || ||| Sbjct 204178 GACTGGTCAGCTTGGTCGACCTCGCCAGCGGTGACCTTTCCTGCGCAAGAAGAGCAAGCA 204237 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 || || ||||| |||||| || | || ||||||||||| || |||| ||||| Sbjct 204238 CCGGCACGGCAAGAGTAGGGCAGAGAGAGTCCGGCTTCTTCAGCGGCGTCCAAGATGTAA 204297 Query 10429 TGATCGTC 10436 |||||| Sbjct 204298 ACATCGTC 204305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622092628371280