Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2625 116 3e-21 seq3072 107 1e-18 seq4017 102 6e-17 seq4073 89.7 4e-13 seq487 82.4 5e-11 >seq2625 Length=346021 Score = 116 bits (128), Expect = 3e-21 Identities = 168/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| | ||| |||||||||| |||||| || || || ||||| || | Sbjct 280197 CATC-CCTCCACGCAGTCTCAGAACCAAATGCAGAGTGCTCTCCTTCTGGATATTGTAGT 280139 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||||| ||| |||| || | ||| || ||| | ||||| || |||||||| || | Sbjct 280138 CGGCCAAACTGCGACCATCCTCGAGTTGCTTGCCGGCGAAAATCAACCGCTGCTGGTCAG 280079 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | ||| || ||||| ||||| || | ||| | | | || || | || Sbjct 280078 GGGGGATGCCCTCCTTGTCCTGGATTTTGCTCTTGA-CGTTGTCGATGGTATCGGAACTC 280020 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| || || || || || | ||| || |||||||||||||| Sbjct 280019 TCGACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTCACGAAGATCTGCAT 279967 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || | ||| ||||||||||| || ||| ||||| || || |||||||| Sbjct 281561 CCTCCTCTCAGCCTCAGGACCAAATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGGCG 281502 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||||||| ||||||| || | |||||| || | || Sbjct 281501 AGTGTCCGACCATCTTCAAGCTGTTTCCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGA 281442 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| ||| | | | | ||||| | || || || Sbjct 281441 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTGTCAATGGTGTCGGAACTCTCAACC 281382 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || || ||||| ||||| |||||||| Sbjct 281381 TCCAAAGTAATCGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 281335 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| |||||||| ||| ||||| ||||||||||| || Sbjct 282246 GCCACCACGAAGACGGAGCACCAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCCGC 282187 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || | | |||| || | ||| || || | ||||| || | |||||| || | ||| Sbjct 282186 TAGAATTCTTCCATCCTCGAGTTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGG 282127 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | || || | | | |||| || || |||| ||| || Sbjct 282126 GATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATA--GTATCTGAGCTCTCA 282069 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || ||||| || || || || ||||| |||||||| Sbjct 282068 ACCTCAAGAGTAATGGTCTTACCTGTCAAGGTCTTCACGAAAATCTGCAT 282019 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| | || || | |||||||||| |||||||| || || || |||||| Sbjct 280421 CCTCCTCGCAGCCTCAACACAAGATGCAAAGTGGACTCTTTTTGGATGTTGTAGTCGGCC 280362 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || || | |||||| ||| | ||||| || |||||||| || | ||| Sbjct 280361 AGCGTGCGACCGTCTTCGAGTTGTTTACCGGCGAAAATCAACCGCTGCTGGTCAGGGGGA 280302 Query 39613 ACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || || || ||||| | || | || |||| | || || | |||||| | Sbjct 280301 ATGCCCTCCTTATCTTGAATTTTCGTCTTCACATTGTCGATC--GTATCAGAGCTTTCGA 280244 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || ||||| | || || |||||||||||||| Sbjct 280243 CCTCAAGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 280195 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | ||| | ||| || | ||||| ||| |||||||| || || || || || Sbjct 280878 GCCTCCCCTCAACCTCAGCACAAGATGCAGAGTCGACTCTTTTTGGATGTTGTAGTCCGC 280819 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || |||| ||||| || || || |||| || || | ||||||||| | || Sbjct 280818 GAGGGTACGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGCTGATCTGGAGG 280759 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| | | |||| |||| || | | | |||||| | |||||| | Sbjct 280758 GATTCCCTCCTTGTC-CTGAATTTTGGTTTTCACGATGTCAATTGTGTCAGAGCTTTCGA 280700 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| || || ||||| ||||| | || || ||||||||||||||| Sbjct 280699 CCTCCAACGTGATGGTTTTCCCCGTGAGCGTCTTCACGAAGATCTGCATG 280650 >seq3072 Length=975934 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| ||||||||| ||| ||||| ||||||||||| || Sbjct 272038 GCCACCACGAAGACGGAGCACCAAGTGCAAAGTGGATTCCTTTTGGATATTATAATCCGC 271979 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || | | |||| || | ||| || || ||||||| || | |||||| || | ||| Sbjct 271978 TAGAATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 271919 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | || || | | | |||| || || |||| ||| || Sbjct 271918 GATTCCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATA--GTATCTGAGCTCTCA 271861 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| || ||||| || || || || ||||| |||||||| Sbjct 271860 ACCTCAAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTGCAT 271811 >seq4017 Length=874442 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| | ||| || | ||||| ||| ||||||||| ||||| ||||| ||| Sbjct 473797 CCACCTCGCAGCCTCAGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCC 473738 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || || |||| || || | ||||||||| | || Sbjct 473737 AGGGTTCGTCCATCTTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGGA 473678 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| | || || || | || |||| | ||||| | |||||| | Sbjct 473677 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACATTGTCGATG--GTGTCAGAGCTTTCGA 473620 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || || || || |||||||||||||| Sbjct 473619 CCTCGAGAGTGATAGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 473571 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || | ||| |||| || | ||| || ||||| || || ||||| ||| Sbjct 472429 CCTCCTCTCAGTCTCAGAACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCC 472370 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | || || ||| |||| || | ||||||||| || | ||| Sbjct 472369 AGCGTCCTTCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGA 472310 Query 39613 ACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || || || ||||| | |||| || |||| | ||||| | ||| |||| Sbjct 472309 ATACCCTCCTTATCTTGAATTTTAGTCTTTACATTGTCGATG--GTGTCAGAGCTCTCCA 472252 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||||| |||||||| ||||| || |||||||||||||| Sbjct 472251 CCTCGAGGGTAATTGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 472203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || || | |||||| || ||| ||||| |||||||| || ||| Sbjct 473569 CCTCCCCTCAATCGTAGCACAAGATGCAAGGTAGATTCCTTTTGAATATTATAGTCTGCC 473510 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| |||| || || |||||||| || | || Sbjct 473509 AAGGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAATCGCTGCTGGTCGGGAGGA 473450 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || || || || ||| || | ||| | | | || |||| |||||| || Sbjct 473449 ATACCCTCCTTATCCTGGATCTTTGTCTTCA-CGTTGTCGATGGTATCTGAGCTTTCAAC 473391 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || || || || || ||||||||||| Sbjct 473390 CTCCAAAGTGATGGTTTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 473343 >seq4073 Length=488838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || || | ||||| || ||||| ||||||||||| || ||| Sbjct 173229 CCTCCTCTGAGACGGAGCACAAGATGCAGGGTAGACTCTTTCTGTATATTATAGTCTGCC 173288 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | || || ||| | || || || | ||||||||| | || Sbjct 173289 AGAGTTCGCCCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGATCAGGAGGG 173348 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| || | ||| | | | ||||| | ||||||||| Sbjct 173349 ATTCCTTCTTTGTCCTGGATTTTCGCCTTGA-CGTTGTCGATCGTGTCGGAGCTTTCCAC 173407 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || || || || || || || || |||||||| Sbjct 173408 CTCTAAAGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 173455 >seq487 Length=466406 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || |||||||| | |||| || ||||| || || || || || | || | Sbjct 182997 ACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTACGACC 182938 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | || || || | || || || | |||||||| | || | ||| || || Sbjct 182937 ATCTTCGAGCTGCTTACCAGCGAAGATCAATCTTTGCTGATCAGGAGGAATGCCCTCCTT 182878 Query 39624 GTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 ||| || || ||||| | |||| || ||||| | ||| ||||| |||| ||| Sbjct 182877 GTCCTGAATCTTAGCTTTAACGTTGTCGATA--GTGTCGGAGCTCTCCACTTCCAGAGTG 182820 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || | |||||||||||||||||||| Sbjct 182819 ATCGTTTTGCCGGTCAGCGTTTTTACGAAGATCTGCAT 182782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347352085733321