Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2226 149 5e-30 seq2334 114 1e-19 seq2642 96.9 3e-14 seq897 96.9 3e-14 >seq2226 Length=1142962 Score = 149 bits (164), Expect = 5e-30 Identities = 680/1060 (64%), Gaps = 34/1060 (3%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| | ||||| ||||| || | || || |||| ||||| || || ||||| Sbjct 211380 ACATTCAATATACCGTTGGCGTCAATGTCGAAGCAGACTGTGATTTGGGGCACGCCTCTG 211439 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | ||||| ||||| || || | |||| | || || || ||||| | || Sbjct 211440 GGTGCAGGGGGGATGCCAGACAGCTCAAATTTCCCGAGGAGGTTGTTATCCCTCGT---- 211495 Query 517385 TTTCGT----TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 | |||| || |||||| | | ||| || ||| ||| ||| || ||||| || || Sbjct 211496 TCTCGTCCTCTCTCCCTCGTACACTTGAATGAGCACTCCAGGTTGGTTGTCTGAGTATGT 211555 Query 517441 TGTAAATACTCTGGATTTTTTACAAGG-AATTGTTGTGTTTCTATCAATAATATTGGTCA 517499 | || || ||| || | | || ||| || ||||| || ||| | | |||| Sbjct 211556 GGAGAAGAC-CTGTTCCTTCTTCGTGGGAATGGTGGTGTTCCTCGGAATTAGAACAGTCA 211614 Query 517500 TAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT 517559 | | || || || || || | ||||||||| || || |||||||| | || | | | Sbjct 211615 TTACTCCTCCGGCCGTCTCGAGACCAAGAGACAGGGGGGTGACATCCAAGAGCAACAAGT 211674 Query 517560 TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 517619 ||| | || || | | | ||| |||||||| || || | ||||| || || | Sbjct 211675 CTTGCACCTTCTCGTTACCCTCTCCAGACAGAATAGCAGCCTGCACGGCAGCTCCGTAAG 211734 Query 517620 CAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 |||| ||||| || || || | | || || || | || || ||||| |||| | Sbjct 211735 CAACGGCTTCGTCGGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAATCTTG 211792 Query 517678 AAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737 || | ||| ||||| || ||||| | ||||| || || | || | || || | Sbjct 211793 CAGCAATTGCTGAACCTTCGGGATACGGGTAGATCCGCCGACGAGAACGACGTCGTGAAT 211852 Query 517738 CTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 | | | ||||||| || | || | |||||| |||||||| | || | Sbjct 211853 G-GAGCTCTTATCCATCTTGGCGTCTCTGAGGCATTTTTCTACGGGTTCCATACATTTCC 211911 Query 517797 TAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-T 517853 | |||| || || || ||||||||||| |||| | || | || | || || | Sbjct 211912 TGAACATATCCATGTTCA--GTTCTTCGAATCTAGCACGGGTGATGGTTG-AGTAGAAGT 211968 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 | | |||||| | | || |||| ||||| || ||||||| | || || | | | Sbjct 211969 CGACACCTTCGTAGAGCGAGTCAATCTCAATAGTCGTTTGAGCAGTGGACGACAAAGTCC 212028 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAA 517972 || || | || || || || ||||||| |||| ||| | | ||| | | || Sbjct 212029 TCTTCGCTCTCTCGGCGGCAGTTCTCAGTCTTC-TAAGTGCTCGGG--GGTTGCTGCTAA 212085 Query 517973 TCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 | | ||| | || || |||||||| || | ||| | | || || | || || | Sbjct 212086 TATCTTTCTTGTACTTCCTCTTGAACTCCTGCACAAAGTGGTTCACCAGCCTGTTGTCGA 212145 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || |||||||| | | |||| ||| | |||||| | |||| ||||| || |||| Sbjct 212146 AGTCCTCACCTCCGAGATGGGTATCTCCGGCGGTAGCTTTCACTTCGAAAATACCTTCTT 212205 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 | | || || || | |||||| || |||||||| | || ||||| | |||||| Sbjct 212206 CGATAGTCAGCAGGGACACATCAAAAGTACCACCACCGAGGTCGAAAATTAACACATTCT 212265 Query 518151 TTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | | ||| || || || ||||| || |||| |||||||||||| || | Sbjct 212266 TCTCACCGACGGAAGTTGCCTTCTTGTCGAGACCGTAGGCAATAGCAGCAGCAGTAGGCT 212325 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | |||||||||| || || || | || || || ||||||||| ||||| || || | Sbjct 212326 CGTTAATAATTCGCATGACGTTCAACCCCGCGATGACTCCTGCATCCTTAGTAGCCTGCC 212385 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 | || |||||||| || || || || || || || || || Sbjct 212386 TCTGAGAATCGTTGAAGTAGGCTGGCACTGTGATGACAGC 212425 >seq2334 Length=378061 Score = 114 bits (126), Expect = 1e-19 Identities = 202/291 (69%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || || || |||||||||||||| | || | || | || || | || | ||||| Sbjct 146952 TTGTCGAAGTCTTCACCTCCCAAATGCGTGTCCCCGGCTGTGGCCTTGACCTCGAAAATA 147011 Query 518084 CCATCTTCAA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 || || || | | || ||||| ||||| || ||||| |||| ||| || |||| Sbjct 147012 CCTTCCTCGATGGTGAGCAAAGA--CACATCGAAAGTACCACCTCCCAAATCGAAGATAA 147069 Query 518142 GTACATTCATTTCTTTGTC-TTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 |||| ||| | || | ||| || || || ||||| || |||| ||||||| Sbjct 147070 GTACGTTCTTCTCACCAACGCTGGTAGCCTTCTTGTCGAGACCGTAGGCAATGGCAGCAG 147129 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 | || || || ||||| || |||| ||||| | ||| || || ||| ||||| |||| Sbjct 147130 CGGTAGGCTCGTTAATGATCCTCATGACATTCAAACCGGCGATGACTCCGGCATCCTTAG 147189 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | ||||| ||||| |||||||| || || ||||| || |||| ||||||| Sbjct 147190 TAGCTTGCCTTTGAGAATCGTTGAAGTAAGCAGGGACGGTAACGACGGCAT 147240 Score = 105 bits (116), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| ||| ||||| || || || || | |||| ||||| |||||||| || || | Sbjct 147599 AAAACAGTGTTGGTGGGGTTCATGGCCACCTGATTCTTGGCGGCATCTCCGATAAGTCGC 147658 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || || ||| || ||||| || || || || ||||| |||||||| || || Sbjct 147659 TCAGTGTCGGTGAATCCGACGTATGAAGGCGTGGTTCGGTTACCCTGATCATTGGCGATG 147718 Query 518645 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || ||||| | | | |||||||||||| |||||||| | || || || | ||| ||| Sbjct 147719 ATCTCAACACGATCGTGTTGCCATACACCAACACAACTGTAGGTGGTACCAAGATCGATA 147778 Query 518705 CCAATAGC 518712 || || || Sbjct 147779 CCGATCGC 147786 >seq2642 Length=355452 Score = 96.9 bits (106), Expect = 3e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 668858 AAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGTACA 668917 |||||||| ||||| |||||||||||||||| || ||||| ||| | |||||||||||| Sbjct 223637 AAAGAAGGGCGTATCCGAGGAAATTTGATGGGCAAGCGTGTGGATTTTTCTGCACGTACA 223696 Query 668918 GTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCT 668965 || || || ||||||| ||||| | | ||||| |||| || ||| Sbjct 223697 GTCATCACGCCTGATCCAAATATCAATATTGATGAACTTGGAGTACCT 223744 >seq897 Length=979407 Score = 96.9 bits (106), Expect = 3e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | |||||| | || | || ||||| |||||||| || || | | |||| Sbjct 887536 TTCTTATCCATACCATATGACAACGACGCTGCAGTCGGTTCATTGATGATACGAAGAACA 887477 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | || || || |||||||||||||| || || ||||| | ||||| ||| || |||||| Sbjct 887476 TCCAGCCCGGCTATTCTTCCTGCATCCTTGGTAGCTTGGCGTTGTGCATCATTGAAATAT 887417 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| || || || | | |||| | |||| |||| || || | Sbjct 887416 GCCGGCACAGTGATTACTGCTTTCGATACTGGTCGTCCAAGGTAAGATTCAGCAGTCTCC 887357 Query 518345 TTCATTTTACTTAAAA 518360 |||||||||| || || Sbjct 887356 TTCATTTTACCTAGAA 887341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780617108432722