Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1018 176 6e-39 >seq1018 Length=294332 Score = 176 bits (194), Expect = 6e-39 Identities = 271/378 (72%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||| || || || ||||| || || | || ||||||||| | ||||| || Sbjct 234736 CTGACGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGT 234677 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997 ||||| | |||| ||| || || |||| ||||| |||||||| || |||| ||| Sbjct 234676 GGCGGCAACAACAATAATTCCGGT---GTTACCCTCAAATCCATCCATTTCAGTCAGAAG 234620 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTG 16054 |||||| | ||||||||| | || ||||| || ||| ||| | || | || Sbjct 234619 CTGGTTCAGAGTTTGTTCTCTCTCGTCATTGCCTCC---ACCGATACCGGTACCCCTCTG 234563 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 | |||| ||||||||||||||||| | ||| || ||||| || |||||| | | | | Sbjct 234562 CCTTCCGACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTC-CTTG-GCC 234505 Query 16115 TTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 ||| |||||||||| || || || ||||||||||||||||| ||||| || | Sbjct 234504 TTCTTGAAGAGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCA 234445 Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | ||| |||| || || || || || ||| || |||||||| ||||||||| Sbjct 234444 GAACCAGAA-ATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAG 234386 Query 16232 AGTCTTACCCGTACCTGG 16249 |||||| || || || || Sbjct 234385 AGTCTTTCCTGTTCCGGG 234368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620710299858640