Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1437 109 6e-19 seq1018 104 3e-17 seq594 87.8 2e-12 seq3268 84.2 3e-11 seq3598 82.4 9e-11 seq1727 82.4 9e-11 >seq1437 Length=1346386 Score = 109 bits (120), Expect = 6e-19 Identities = 251/375 (67%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 |||||| ||||| ||||| | || || ||| ||| || | |||| | ||| ||||| Sbjct 434872 ACGATCAAAACGTCCTGGCCTCAGAAGGGCAGAATCGAGCACATCGGGTCTGTTGGTAGC 434931 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 || | || | || ||| | | |||| || ||||| || || ||||||||||| Sbjct 434932 AGCCAAAACAATAACTCCACTGTTCCCTCCGAACCCATCCATCTCAGTCAGAAGCTGGTT 434991 Query 11622 GATCGTCTGTTCACGCTCATCG-TTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACC 11678 || || || || | ||| ||| || | || ||| ||||| | || | |||| Sbjct 434992 AATAGTTTGCTCTCTCTCGTCGTTTCCACCGC---CCATTCCTGCTCCTCTCTGCCTACC 435048 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||| || |||||||| |||||||| | || || || || || |||| ||||| Sbjct 435049 GACGGCATCAATCTCGTCGATGAAAAGAATGCAAGGAGCCTTAGCCTTGGCCTTCTCGAA 435108 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 || || || || || ||||| || || ||||||| ||| || || | | || | Sbjct 435109 CAGGTCTCGGACTCGTGAAGCTCCCACTCCGACGAACAGCTCTACAAACTCAGATGCGGC 435168 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || ||||||||| || ||||| |||| ||||| || || ||||| ||||| Sbjct 435169 GCATGAAAAGAAGGGAACTCCAGCTTCACCGGCGACAGCTCGGGCCAGAAGAGTTTTACC 435228 Query 11859 CGTACCAGGTGCACC 11873 || ||||| | ||| Sbjct 435229 AGTTCCAGGAGGACC 435243 >seq1018 Length=294332 Score = 104 bits (114), Expect = 3e-17 Identities = 254/378 (67%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || |||||| || || || || || || |||||| | || || ||||| | || || || Sbjct 234736 CTGACGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGT 234677 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||||||| || | ||| || || | | || || || |||||||| || |||||||| Sbjct 234676 GGCGGCAACAACAATAATTCCGGTGTTACCCTCAAATCCATCCATTTCAGTCAGAAGCTG 234617 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCC-GAACGCTTCT- 11674 ||| | || ||||| | ||| || || || | ||||| | || | || | ||| Sbjct 234616 GTTCAGAGTTTGTTCTCTCTCGTCATT-----GCCT-CCACCGATACCGGTACCCCTCTG 234563 Query 11675 --TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 | ||||| || ||||||||||| | ||| || || || || || | |||| Sbjct 234562 CCTTCCGACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTCCTTGGCCTT 234503 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | ||| || || | || || ||||| ||||| || ||||| || ||||| | | Sbjct 234502 CTTGAAGAGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCAGA 234443 Query 11793 GGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 ||||| | ||| | || ||||| || || ||||| ||||| ||||| |||| Sbjct 234442 ACCAGAA-ATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAGAG 234384 Query 11852 TCTTACCCGTACCAGGTG 11869 |||| || || || |||| Sbjct 234383 TCTTTCCTGTTCCGGGTG 234366 >seq594 Length=317990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 |||||| ||||||||| |||||||| || ||| | ||| | ||| || ||| Sbjct 156201 CTCGTAGCTGGTGTACAGCTCCTCAAAACTCTCTCCCCAGCAATCTGCAAGCCCAGGCGC 156260 Query 110571 CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTC 110630 | || ||| ||||| || ||||| |||| || | |||||||||||||| || || Sbjct 156261 TTCGTTGGGGCAGAACAGCGACCAGGTTCCGTCCGATTGCACCCTCTTCATGAAAAGATC 156320 Query 110631 AGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAG 110690 ||||| ||| | | | || | ||| | |||| |||||| | || || || Sbjct 156321 AGGAACCCAAAGGCCATAAAACAAGTCCCTTGCGCGAGACTCTTCCTTTCCGTGATTCTT 156380 Query 110691 GCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | ||| |||| |||||| | |||||| | |||||| || ||||| || | |||| Sbjct 156381 TCTTAGGTCCAGAAAGTCAAAGATATCGGCGTGCCAAGGCTCGAGGTAAATGGCGA 156436 >seq3268 Length=559654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 168487 ACAGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT 168546 |||||||| | ||| |||||||| || ||||| | || || ||||| |||| | || Sbjct 30287 ACAGCGAGTGCTTTGGCTGAATCTCCTTCTGTAAGAATCAGGGTACA--TTCCTGTGAGT 30230 Query 168547 GCCGT--ACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA-TCTTAGACTTT 168603 || |||||| | ||| || ||||||||||||| ||| ||||||| ||| | | | Sbjct 30229 TCCTCCCACCAGCATCGTTGGCGTCGTCCAATTTGGTGATTCCAGTGATTCTCTGGCGCT 30170 Query 168604 CGAGCTCCATCAGTCTTTTTGAGTTCTTTCATCTCTTTGAA 168644 | || ||||| |||||||| || ||||| | | |||||| Sbjct 30169 TG-GCACCATCCGTCTTTTTCAGGTCTTTGCTTTGTTTGAA 30130 >seq3598 Length=323913 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| || || Sbjct 235252 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTA 235311 Query 136776 TGGG-AACAGCT 136786 |||| |||||| Sbjct 235312 TGGGCCACAGCT 235323 >seq1727 Length=439623 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| || || Sbjct 131508 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTA 131567 Query 136777 GGGAACAGCT 136786 || ||||| Sbjct 131568 TGGGCCAGCT 131577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588945542578600