Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1018 176 5e-39 seq1437 98.7 1e-15 seq594 89.7 6e-13 >seq1018 Length=294332 Score = 176 bits (194), Expect = 5e-39 Identities = 265/373 (71%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||||||||| || || || ||||| || || | || ||||||||| | ||||| || Sbjct 234736 CTGACGATCAAATCGTCCAGGTCGAAGCAGAGCAGCGTCGAGGATATCAGCCCGATTGGT 234677 Query 9248 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9307 ||||| | |||| ||| || || | | ||||| |||||||| || |||| ||| || Sbjct 234676 GGCGGCAACAACAATAATTCCGGTGTTACCCTCAAATCCATCCATTTCAGTCAGAAGCTG 234617 Query 9308 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTT 9364 ||| | ||||||||| | || ||||| || ||| ||| | || | ||| | Sbjct 234616 GTTCAGAGTTTGTTCTCTCTCGTCATTGCCTCC---ACCGATACCGGTACCCCTCTGCCT 234560 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 9424 ||| ||||||||||||||||| | ||| ||||| || || |||||| ||| | | Sbjct 234559 TCCGACGGCATCAATCTCATCCACGAACACAATGCAAGGAGCATTTTCCTTGGCCTTCTT 234500 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 |||||||| | || | | || ||||||||||||||||| ||||| || | | | Sbjct 234499 GAAGAGATCCCTCACTCGTGATGCTCCCACACCAACAAACATTTCCACGAACTCAGAACC 234440 Query 9485 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 9543 ||| |||| || || || || || ||| || |||||||| |||||||||||||| Sbjct 234439 AGAA-ATTGAGAAAAATGGAACTCCAGCTTCGCCAGCAATGGCCTTGGCGAGAAGAGTCT 234381 Query 9544 TACCCGTACCTGG 9556 | || || || || Sbjct 234380 TTCCTGTTCCGGG 234368 >seq1437 Length=1346386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| |||| ||| |||||||||||||| || | || || || | | Sbjct 434963 AACCCATCCATCTCAGTCAGAAGCTGGTTAATAGTTTGCTCTCTCTCGTCGTTTCC--AC 435020 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 ||| || || | | ||| | || |||||||||||||| || ||||| | ||| | Sbjct 435021 CGCCCATTCCTGCTCCTCTCTGCCTACCGACGGCATCAATCTCGTCGATGAAAAGAATGC 435080 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | ||| | || || || || || || | | || ||||| || | Sbjct 435081 AAGGAGCCTTAGCCTTGGCCTTCTCGAACAGGTCTCGGACTCGTGAAGCTCCCACTCCGA 435140 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | |||| ||| ||||| | | |||| ||| | |||||| || || |||||| | Sbjct 435141 CGAACAGCTCTACAAACTCAGATGCGGCGCATGAAAAGAAGGGAACTCCAGCTTCACCGG 435200 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | |||||||| |||||||| ||||| || || || Sbjct 435201 CGACAGCTCGGGCCAGAAGAGTTTTACCAGTTCCAGG 435237 >seq594 Length=317990 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| ||||| ||||| ||||| || ||| | ||||| | |||||||| | | Sbjct 155743 GGTAGGGCAATTGACGCCAAGTTGCACACCGCCATTTCATCGGGTGCGGTGTACTCCACA 155802 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||| | ||||| ||| |||||||||| |||| ||||||||||| | Sbjct 155803 ATCTCCGTACATAGATTGGATGACTTGATCGTCCCCAGGTTCTGCTGGTTACTCTTCCGG 155862 Query 106577 TTGCACGCATCCTTGTA 106593 ||||| || |||| ||| Sbjct 155863 TTGCATGCGTCCTGGTA 155879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589950290617880