Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2878 259 6e-64 seq467 145 9e-30 seq3282 127 2e-24 seq1308 107 2e-18 seq3761 102 1e-16 seq164 95.1 1e-14 seq2067 93.3 5e-14 seq1018 93.3 5e-14 seq434 87.8 2e-12 seq595 86.0 8e-12 >seq2878 Length=397857 Score = 259 bits (286), Expect = 6e-64 Identities = 350/485 (72%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 181594 TAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 181653 |||||| | || || ||||| || || || || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 181654 ACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTG 181713 | | ||||| |||||||| || || ||||| || ||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 181714 GGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGA 181773 | ||||||| || || || || || || || | || || |||||| | | |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 181774 ACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTG 181832 ||||||| | ||| || | | || || || ||||| ||||| ||||| || ||||||| Sbjct 140468 ACTTGCTAGATCTGTTCA-ATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 181833 CTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGC 181892 |||| || || ||||| ||||| || |||||| | |||||||| ||||||| ||||| | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 181893 CGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATT 181952 | ||||| ||||| || || ||||| | || |||| || | || ||||||||||| | Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 181953 GGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCT 182012 |||| | || || ||||||||||||||||| ||||| | | |||| || | | | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 182013 CTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATA 182072 ||||||||||||| || || ||||||||| | | | |||| ||||| ||||| | Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 182073 CTTTC 182077 | ||| Sbjct 140767 CATTC 140771 >seq467 Length=265627 Score = 145 bits (160), Expect = 9e-30 Identities = 134/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 ||||| ||||| |||||| | || ||||| ||||| ||||| || | |||| ||||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 |||||||| | ||||||||||| || | ||||||| ||| || |||||||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 ||||| || ||||| |||||||||||||| || ||| | || |||| ||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 180543 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 180602 || || ||||| ||||| | || | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 180603 TTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTC 180662 || ||||| || | |||| ||||||||||||| | ||||||||||| || | || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 180663 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 180710 ||||| ||| || ||||||||||||||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 180626 TCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGA 180685 |||||||||||| | ||||||||||| || | ||||||| ||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 180686 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 ||||||||| || ||||| |||||||||||||| || ||| | || |||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 179896 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 179955 |||| ||||||| || | || || || |||||||| |||||||| || ||||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 179956 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGC 180015 | || || ||| | |||||||| || || |||||||| || || |||| || ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 180016 TGTATAACGGTGGTCCTTTCCAACTT 180041 |||| ||||||||||||| | ||||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACTT 108316 >seq164 Length=700310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACG 182320 ||||| || || ||||| ||||||||||| | ||| |||| || ||||| || || || Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 182321 TTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT 182380 || || ||||| || ||| | || ||||||||| | | || ||| | ||| | ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 182381 CAACCACATGAGAACTTTGTGTTCCCTGAGGAAGT 182415 || || ||||| || |||| ||||| ||||| || Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGT 564017 >seq2067 Length=7856 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||| |||||||||| || ||||| | || ||||||| || ||||||||||||||||| Sbjct 3955 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAAT 3896 Query 141314 CCTACCTGGGGAGTCATGCTTGCTT 141338 |||||||| |||| ||||||| || Sbjct 3895 CCTACCTGAGGAG--ATGCTTGTTT 3873 >seq1018 Length=294332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||| |||||||||| || ||||| | || ||||||| || ||||||||||||||||| Sbjct 216835 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAAT 216776 Query 141314 CCTACCTGGGGAGTCATGCTTGCTT 141338 |||||||| |||| ||||||| || Sbjct 216775 CCTACCTGAGGAG--ATGCTTGTTT 216753 >seq434 Length=438060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/168 (72%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 181817 TTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCC 181876 ||||| || |||| |||||| || | ||| | ||||| || ||| | | | | |||| Sbjct 407136 TTTTCTGGACCTACTGCTGTTTTTTTATCTATCTTTCTTATTTATATTTTAGTAAAATCA 407077 Query 181877 AGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCT-TCCT 181935 ||||||||||||| || ||||| | ||| || || ||||| | || ||| | | | Sbjct 407076 GGTTGGTTCTTTGCACCTAGTTTTGATGTAGCTGCAATTTTTAGATTTAATCTTTATTTT 407017 Query 181936 CCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGT 181983 ||| | ||||||||| | ||| | || || || |||||||||| ||| Sbjct 407016 CCAAGTCTTTCATAACTAGACTTTAAACCCATTTCATATGATGGTTGT 406969 >seq595 Length=533780 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 182192 ATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 182251 ||||| || || || || | || | |||| ||| | || || || | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 182252 CTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAG 182311 | || | ||||| || || ||||| ||||||||||| | ||| |||| || ||||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 182312 TTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCA 182371 || || || || || ||||| || ||| | || ||||||||| | | || ||| | ||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 182372 CCAGTCGATCAACCACATGA 182391 | ||||| || ||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610365234855480