Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2878 163 3e-35 seq467 132 6e-26 seq3761 120 4e-22 seq3792 118 1e-21 seq3282 107 2e-18 seq164 105 8e-18 seq595 91.5 2e-13 seq1308 86.0 7e-12 seq60 82.4 9e-11 >seq2878 Length=397857 Score = 163 bits (180), Expect = 3e-35 Identities = 277/399 (69%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||||||||||||||||||| ||| |||||||| ||| | || |||||||||| Sbjct 140352 TGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGGACT 140411 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 |||||||| | ||||| | |||| | ||||| || ||| | |||||||||| | Sbjct 140412 TTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAACTT 140471 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 || || ||| | | ||||| || ||| | || || |||| ||| || || Sbjct 140472 GCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGCTGTT 140531 Query 170943 TTCACTAGCA-TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 || || | | ||||| || ||||| |||| || ||||||| || ||||| Sbjct 140532 TTTG-TATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACCTAG 140590 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 || ||||| || ||||||||| | | ||| | || | ||||| || || ||| || Sbjct 140591 TTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTGGAC 140650 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 || || ||||| || ||||||||||| || ||| | |||||| || | ||||| || Sbjct 140651 TTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATGCGC 140710 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 171160 ||||| ||||| || || |||| || || | |||||| Sbjct 140711 AATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGA 140749 >seq467 Length=265627 Score = 132 bits (146), Expect = 6e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 170218 GGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 |||||| |||| ||||| |||||||| |||||||| |||||||||||||| |||||||| Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 170278 GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATG 170337 | | || | | || |||| |||| || | ||| | || ||| | |||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 170338 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||||||||||||||| | || || ||||||||||| |||||| |||| ||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3761 Length=231418 Score = 120 bits (132), Expect = 4e-22 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 169552 GTAGCGGGTTCT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATC 169610 ||| | |||||| ||||| || || || |||||||| |||||||| || |||| | || Sbjct 108173 GTATCTGGTTCTCTTCTT-TACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTC 108231 Query 169611 AAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTT 169670 |||||||| ||||||||||||| || |||||||| || |||||||||||||||| Sbjct 108232 TGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTT 108291 Query 169671 GTATAATGGTGGTCCTTA 169688 ||| || ||||||||||| Sbjct 108292 GTACAACGGTGGTCCTTA 108309 >seq3792 Length=366655 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 169756 TACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCA 169815 ||| | ||||| |||||||||||||| ||||||||| || || ||||| ||||||| Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 169816 TTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTA 169875 ||||| ||||| | ||||| ||||||| || ||||| || |||||||| || Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 169876 GGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCA 169913 |||||||| ||||||||||| || ||| ||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3282 Length=366234 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 170203 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAAC 170262 ||||| || || | |||||| |||| ||||| |||||||| |||||||| ||||||||| Sbjct 190892 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAAC 190951 Query 170263 CAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGA 170322 ||||| |||||||| | | || | | || |||| |||| || | ||| | Sbjct 190952 CAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGT 191011 Query 170323 GCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACAC 170364 || ||| | ||||||||||||||||||||| | || || ||| Sbjct 191012 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq164 Length=700310 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 171390 GCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTC 171449 || ||||||||||| || ||||| || | |||||||| || ||||| || || ||||| Sbjct 563866 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 563925 Query 171450 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAA 171509 || || || ||||| | | ||||||||||| ||||| |||||| || | || || Sbjct 563926 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 563985 Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAAC 171557 || ||||| || | ||||||||||| || || | ||| | || ||| Sbjct 563986 CCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq595 Length=533780 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171355 CTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGA 171414 |||| || | |||||| |||| | || | | || ||||||||||| || ||||| | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 171415 TAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATG 171474 | | |||||||| || ||||| || || ||||| || || || ||||| | | |||| Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 171475 AAGGTATGAGAGCATGGATGTCA 171497 ||||||| ||||| |||||| || Sbjct 284226 AAGGTATTAGAGCTTGGATGGCA 284204 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| |||| || | ||| | || ||| | ||||||||||||||||||||| | || Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 170359 GCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 || ||||||||||| |||||| |||| ||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq60 Length=300730 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 155360 AGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTG 155419 ||| |||||| | || ||| |||| ||||| || |||| ||||||||||| | ||||| Sbjct 162601 AGCTGAAGATGTGGCGAAGCGACTCATGGATTACGGATATCATGCACCTACCATGTCGTG 162660 Query 155420 GCCTGTGTTAGGAACTATGATGGTAGAACCCACAGAGTCTGAG 155462 |||||| | |||||| ||||| | || || |||||| |||| Sbjct 162661 GCCTGTCTCCGGAACTTTGATGATCGAGCCGACAGAGAGTGAG 162703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579182847458080