Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2878 242 4e-59 seq467 141 1e-28 seq3282 118 1e-21 seq3792 107 2e-18 seq1308 107 2e-18 seq164 107 2e-18 seq3761 104 3e-17 seq595 96.9 4e-15 seq2371 86.0 7e-12 >seq2878 Length=397857 Score = 242 bits (268), Expect = 4e-59 Identities = 307/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 169539 TATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGA 169598 ||||||| || ||||||||||| ||||| ||| ||||| ||||| |||||| | |||| Sbjct 140350 TATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGGA 140409 Query 169599 ACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAAT 169658 |||||||| ||||||||||||||||| || || || || ||| | | || |||||| Sbjct 140410 CTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAAC 140469 Query 169659 TGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTG 169718 | || | | || | |||||||||||||| ||||| || ||||| |||||||||| Sbjct 140470 TTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGCTG 140529 Query 169719 TATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCT 169778 | ||||| ||| |||||||| || || | ||||| || ||||| ||||| || Sbjct 140530 TTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACCTA 140589 Query 169779 CCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGA 169838 ||||| ||| | ||||| || || || | | || | ||||| || || ||||||| Sbjct 140590 GTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTGGA 140649 Query 169839 CGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTG 169898 | || || |||||||| ||||||||||| || ||| | || || | || | | | | Sbjct 140650 CTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATGCG 140709 Query 169899 CTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTT 169958 | || || |||| ||| || ||||| || || | |||||| ||||| ||||| || | Sbjct 140710 CAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACACAT 140769 Query 169959 TC 169960 || Sbjct 140770 TC 140771 >seq467 Length=265627 Score = 141 bits (156), Expect = 1e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746 ||| ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| || Sbjct 211265 CACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGG 211206 Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTAT 168806 |||||| | ||||| ||||| ||| || | ||||| ||| || |||||||||||||| Sbjct 211205 TCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTAT 211146 Query 168807 GCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 |||||| |||||||| ||||||||||| || || | ||||||| ||| Sbjct 211145 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 168658 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 168717 || || ||||| || || | || || ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 168718 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTG 168777 || ||||| || | |||| |||| |||||||| | ||||| ||||| ||| || | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 168778 AACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 168825 ||||| ||| || |||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 168217 TATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCG 168276 || ||||||||||||||||| ||||| ||||||||| || || ||||| ||||| || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 168277 AGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTC 168336 | ||| || ||| | | || ||| | |||||||| |||||||| || | ||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 168337 GGAATCTCAGGAACATTCAACTACATG 168363 || ||||| || || ||||| | |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATG 281961 >seq1308 Length=500924 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 168741 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGA 168800 ||| |||||||| | ||||| ||||| ||| || | ||||| ||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 168801 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 |||||||||||| |||||||| ||||||||||| || || | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq164 Length=700310 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 170138 AATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 170197 ||| | ||||| |||||||| || || || || | |||||||| |||||||||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 170198 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCT 170257 || || || || || ||||| || |||| |||||||| || | || ||| ||||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 170258 GCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||||| || |||||||| | | |||||||| || ||||| || Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq3761 Length=231418 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 168011 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTT 168070 |||| ||||||| || | || || || |||||||| |||||||| || | ||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 168071 CTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGT 168130 || ||||| || | |||||||| || || |||||||| || || | ||||| |||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 168131 TGTATAACGGTGGTCCTTTCCAACT 168155 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq595 Length=533780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 170112 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 170171 ||||||| || | || | ||| | ||| | ||||| |||||||| || || || | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 170172 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 170231 | | |||||||| |||||||||||||| || || || || ||||| || |||| |||| Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 170232 AAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGA 170274 |||| || | || ||| ||||| || ||||| || ||||| Sbjct 284226 AAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq2371 Length=186017 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 167942 CAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGC 168000 |||||||| || || ||||| | || || | || ||||| ||||| || || ||||| Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 168001 ATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 168060 ||||||||||| || ||||||| || | || || || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 168061 GTCCCTTCTTCTAATGCTATTGGACTTCACT 168091 | ||| | ||| ||||| || | |||| Sbjct 41111 ATTCCTACCTCTGCAGCTATCGGTTTACACT 41141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574443892533960