Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2878 251 8e-62 seq467 145 8e-30 seq3282 118 1e-21 seq1308 116 4e-21 seq3761 109 6e-19 seq3792 105 7e-18 seq1921 84.2 2e-11 >seq2878 Length=397857 Score = 251 bits (278), Expect = 8e-62 Identities = 367/516 (71%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 165365 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 165424 || ||| | ||||| || ||||||||||||||| | | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 165425 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 165484 | ||||| ||||| || ||||| ||||| | ||| |||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 165485 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAA 165544 ||||||| || || || || || || || |||| || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 165545 TTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 165603 | || | ||| || | | ||||| || ||||| |||||||| ||||| ||||| || Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 165604 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 165663 ||||||||| || ||||| || || ||| | || ||||| |||||||||| || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 165664 ATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTG 165723 ||| || || || ||||| || || || |||| || | ||||| || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 165724 GACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTC 165783 ||| || || || || |||||||||||||| || || | | |||| ||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 165784 TGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATAC 165843 || || || |||| ||| || ||||||||| | | | |||||||||| | |||||| || Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 165844 TTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAAC 165879 ||| || ||| || | ||||| ||||| ||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCAGTGGGAAGCAAC 140803 >seq467 Length=265627 Score = 145 bits (160), Expect = 8e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 164609 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 164668 ||| ||||| |||||| | || ||||| ||||| ||||| || | | || |||| || Sbjct 211265 CACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGG 211206 Query 164669 TCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTAT 164728 |||||| | ||||||||||| || || ||||||| ||| || |||||||||||||| Sbjct 211205 TCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTAT 211146 Query 164729 GCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 ||| || ||||||||||||||||||||||| || | ||||||| ||| Sbjct 211145 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 164580 GGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAAC 164639 || || ||||| || || | ||| | ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 164640 TTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTC 164699 || ||||| || | | || |||| |||||||| | ||||||||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 164700 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCAC 164747 ||||| ||| || ||||||||||||||||| || |||||||||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 164663 TCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGA 164722 ||| |||||||| | ||||||||||| || || ||||||| ||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 164723 AGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 ||||||||| || ||||||||||||||||||||||| || | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 163941 GGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCA 164000 ||||| || | || || || |||||||| |||||||| || |||| | || || Sbjct 108179 GGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGCT 108238 Query 164001 ATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAAC 164060 || ||| | ||||||||||| ||||||||||| || || ||||||||||| | |||||| Sbjct 108239 ATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAAC 108298 Query 164061 GGTGGTCCTTTCCAACTT 164078 |||||||||| | ||||| Sbjct 108299 GGTGGTCCTTACGAACTT 108316 >seq3792 Length=366655 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 164138 TTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGC 164197 ||||||| | |||||||||||||||||| |||||| || || || || ||||| || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 164198 ATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCT 164257 | || || ||| || |||| ||| | |||||||| ||||| |||| ||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 164258 GGGCATCTCTGGCACCTTCAACTACATG 164285 || |||||||| || ||||| | |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 164712 CTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 || ||||||||||||||||| || |||||||||||||||||||||||||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 164772 G 164772 | Sbjct 54827 G 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556896000026280