Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq467 147 2e-30 seq3282 116 4e-21 seq2371 114 1e-20 seq3761 105 8e-18 seq1308 100 3e-16 seq1921 89.7 6e-13 >seq467 Length=265627 Score = 147 bits (162), Expect = 2e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||| | || ||||| |||||||| || || ||||||||||||||||| ||||| || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426 | | ||| | ||| || |||| ||| | | ||| | || |||||||||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 ||||| |||||||| |||||||||||||||||||| ||||||||||| ||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 116 bits (128), Expect = 4e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | |||||| | || ||||| |||||||| || || |||||||||||| Sbjct 190892 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAAC 190951 Query 169352 CAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGA 169411 ||||| ||||| || | | ||| | ||| || |||| ||| | | ||| | Sbjct 190952 CAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGT 191011 Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCAC 169453 || ||||||||||||||||| |||||||| |||||||||||| Sbjct 191012 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq2371 Length=186017 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 168562 TTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCACCTGTCGATAT 168621 ||||||||||||| | || |||||| |||| |||||||| || || ||||| ||||| Sbjct 40984 TTTATTAACAGCAACTTCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATAT 41043 Query 168622 CGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGG 168681 ||||| ||| | ||||||||| | ||| |||| | || ||||| |||||||| || || Sbjct 41044 TGACGGTATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGG 41103 Query 168682 TGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACT 168719 ||| || |||| | || || |||||| |||||| Sbjct 41104 TGCTATTATTCCTACCTCTGCAGCTATCGGTTTACACT 41141 >seq3761 Length=231418 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 168641 GTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCA 168700 ||| | ||| |||| | || ||||| |||||||| || ||||| || |||| | || Sbjct 108173 GTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 108232 Query 168701 AACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTA 168760 || |||||| ||||||||||||| ||||||||||| ||| | | ||||| ||||| Sbjct 108233 GCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTG 108292 Query 168761 TATAATGGTGGTCCTTAC 168778 || || |||||||||||| Sbjct 108293 TACAACGGTGGTCCTTAC 108310 >seq1308 Length=500924 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 169448 GCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||||| ||||||||||| ||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq1921 Length=72791 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471 || ||||||||||||||||| |||||||| |||||||||||||||||||| || |||||| Sbjct 54761 GCCAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTA 54820 Query 169472 GC 169473 || Sbjct 54821 GC 54822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564412411313760