Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2878 127 2e-24 seq164 114 2e-20 seq467 113 5e-20 seq3761 109 6e-19 seq595 102 1e-16 seq3282 95.1 1e-14 seq3792 86.0 7e-12 seq60 82.4 9e-11 >seq2878 Length=397857 Score = 127 bits (140), Expect = 2e-24 Identities = 269/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 ||||||||||||||||||||| || ||||||| ||| | || || |||||| Sbjct 140352 TGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGGACT 140411 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 |||||||| | ||||| | |||| | ||||| || ||| | || || ||||| | Sbjct 140412 TTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAACTT 140471 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 || || ||| | | ||||| || ||| | || || |||| ||| || || Sbjct 140472 GCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGCTGTT 140531 Query 173365 TTCACTAGCATCTTTT-TAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 || || | |||| | || || || |||| || ||||||| || |||||| Sbjct 140532 TTTG-TATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACCTAG 140590 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| || ||||| ||| | | ||| | || | ||||| || || ||| || Sbjct 140591 TTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTGGAC 140650 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 || || ||||| || ||||||||||| || ||| | |||||| || | |||| || Sbjct 140651 TTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATGCGC 140710 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 173582 ||||| ||||| || || |||| || || | |||||| Sbjct 140711 AATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGA 140749 >seq164 Length=700310 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 173812 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTC 173871 || ||||| ||||| || ||||| || | |||||||| |||||||| || || ||||| Sbjct 563866 GCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTT 563925 Query 173872 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAA 173931 || || || ||||| | | ||||||||||| ||||| |||||| || || |||||| Sbjct 563926 TATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAG 563985 Query 173932 CCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAAC 173979 || ||||| || | ||||| ||||| || || | ||| | || ||| Sbjct 563986 CCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq467 Length=265627 Score = 113 bits (124), Expect = 5e-20 Identities = 128/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 172636 GGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 |||||| | || ||||| |||||| | || ||||| ||||| |||||||| ||||| || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 172696 GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATG 172755 | | ||| | || || |||| ||| || | ||| | || ||||| |||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 172756 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||||||| | || || ||||||||||| ||||| | ||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 211102 >seq3761 Length=231418 Score = 109 bits (120), Expect = 6e-19 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 171976 GGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGC 172034 |||||| ||||| || || || |||||||| |||||||| || |||| | || || Sbjct 108179 GGTTCTCTTCTT-TACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGC 108237 Query 172035 AATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAA 172094 || ||| | |||||||||||||| |||||||| || | || ||||||||||||||||| Sbjct 108238 TATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAA 108297 Query 172095 TGGTGGTCCTTA 172106 ||||||||||| Sbjct 108298 CGGTGGTCCTTA 108309 >seq595 Length=533780 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 173788 GTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 173846 |||||| | || |||| ||| | || ||||| ||||| || ||||| || | ||||| Sbjct 284335 GTAGGTTTAGCT-TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGC 284277 Query 173847 AGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAG 173906 ||| |||||||| || || ||||| || || || ||||| | | ||||||||||| || Sbjct 284276 AGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAG 284217 Query 173907 AGCATGGATGTCATCTGTAGATCAACCACATGA 173939 ||| |||||| || || |||||| || ||||| Sbjct 284216 AGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq3282 Length=366234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 172621 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAAC 172680 ||||| || || | |||||| | || ||||| |||||| | || ||||| ||||| ||| Sbjct 190892 TGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAAC 190951 Query 172681 CAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGA 172740 ||||| ||||| || | | ||| | || || |||| ||| || | ||| | Sbjct 190952 CAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGT 191011 Query 172741 GCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACAC 172782 || ||||| ||||||||||||||||||||| | || || ||| Sbjct 191012 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 172174 TACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCA 172233 ||| | ||||||||| | || ||||| ||| ||||||||||| || || | || || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 172234 TTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTA 172293 |||||| ||| | | || || | ||||| || ||||| || |||||||| || Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 172294 GGTATCTCAGGTACGTTCAACTTTATG 172320 |||||||| ||||| ||||| || ||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATG 281961 >seq60 Length=300730 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 160035 AGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTG 160094 ||| |||||| | || ||| |||| ||||| || |||| ||||||||||| | ||||| Sbjct 162601 AGCTGAAGATGTGGCGAAGCGACTCATGGATTACGGATATCATGCACCTACCATGTCGTG 162660 Query 160095 GCCTGTGTTAGGAACTATGATGGTAGAACCAACAGAGTCTGAG 160137 |||||| | |||||| ||||| | || || |||||| |||| Sbjct 162661 GCCTGTCTCCGGAACTTTGATGATCGAGCCGACAGAGAGTGAG 162703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588020790402320