Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2878 248 1e-60 seq467 118 1e-21 seq3792 105 7e-18 seq3761 100 3e-16 seq3282 96.9 4e-15 seq1308 86.0 7e-12 seq164 86.0 7e-12 seq595 84.2 2e-11 >seq2878 Length=397857 Score = 248 bits (274), Expect = 1e-60 Identities = 347/484 (72%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 163791 TAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 163850 ||||||| | || || ||||| || || || || | | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 163851 TCTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTG 163910 | ||||| ||||| || || || ||||| || ||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 163911 GAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGA 163970 || |||||| || || || || || ||||| | || || || ||| | || |||||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 163971 ACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTG 164029 ||||||| | ||| || | | | || || ||||| ||||| || ||||| ||||||| Sbjct 140468 ACTTGCTAGATCTG-TTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 164030 CTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTC 164089 |||| || || ||| ||||| || || ||| | || |||||| ||||||| || || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 164090 CATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACT 164149 | |||||| || || ||||| || ||||| | | || ||||||| |||||||||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 164150 GGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTAT 164209 ||||||| ||||| |||||||||||||| || ||||| | |||| | || | ||| Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 164210 CTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACA 164269 || |||||||| | || ||||| ||||| || | ||||||||| || ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 164270 CCTT 164273 | || Sbjct 140767 CATT 140770 >seq467 Length=265627 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 163329 ||||| | ||||| ||||| || || | |||||||| | ||||||||||||||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 163330 CACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 || || || || |||||||||||||| || ||| | || |||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 211102 >seq3792 Length=366655 Score = 105 bits (116), Expect = 7e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 162738 TTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAG 162796 ||||||| | ||||||||||| ||||| ||| || ||||| || || || ||||| || | Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGCTG 281872 Query 162797 CATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCT 162856 | | || || ||| || |||| ||| | |||||||| |||||| |||| ||||| | Sbjct 281873 CTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTT 281932 Query 162857 TGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCA 162896 | |||||| |||||| ||||| | |||| ||| |||| Sbjct 281933 TAGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 162533 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 162592 |||| ||||||| || | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 162593 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 162652 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 162653 TGTATAACGGTGGTCCTTTCCAACT 162677 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3282 Length=366234 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269 || ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| ||| Sbjct 190916 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 190975 Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 163329 ||||| | ||||| ||||| || || | |||||||| | ||||||||||||||| Sbjct 190976 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 191035 Query 163330 CACGAGCGCAATGCTCAC 163347 || || || || |||||| Sbjct 191036 CATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 163263 TCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGA 163322 ||| |||||||| | ||||| ||||| || || | |||||||| | |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 163323 AGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 163372 ||||||||| || || || |||||||||||||| || ||| | || |||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTG 59661 >seq164 Length=700310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 164452 AATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTC 164511 ||| | ||||| ||||||||||| ||||| ||| | |||||||| ||||| || || Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 164512 GAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCA 164571 || ||||| ||||| || || || ||||| || ||||| | | || ||| | ||| | Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 164572 GTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCC 164618 || ||||| ||| |||| |||||||| || || ||||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq595 Length=533780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 164426 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGA 164485 ||||||| || | || | ||| | ||| | ||||| ||||||||||| ||||| | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 164486 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACG 164545 || | |||||||| ||||| || || || ||||| ||||| || || || ||||| || | Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 164546 AAGG 164549 |||| Sbjct 284226 AAGG 284223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557555165937400