Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2878 246 3e-60 seq3792 134 2e-26 seq467 114 1e-20 seq164 113 5e-20 seq3761 102 9e-17 seq1308 100 3e-16 seq595 100 3e-16 seq2371 89.7 6e-13 >seq2878 Length=397857 Score = 246 bits (272), Expect = 3e-60 Identities = 359/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 168654 AACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTT 168713 || ||| | ||||| || ||| |||||||||| || | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 168714 CTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGG 168773 | ||||| ||||| |||||||| ||||| | ||||| ||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAA 168833 ||||||| || || || || || || || |||| || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 168834 CTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 168892 || || | ||| || | | ||||| || ||||| |||||||| ||||| ||||| || Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 168893 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 168952 ||||||||| || ||||| || || ||| | || ||||| |||||||||| || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 168953 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTG 169012 ||| || || | ||||| || |||| |||| || | ||||| || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 169013 GACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTC 169072 ||| | || ||||| |||||||||||||| || || |||| || | || | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 169073 TGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATAC 169132 || ||||| |||| ||| || ||||||||| | | | |||||||||| ||||| || Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 169133 TTTCAAAGCATTTGACAGCACTCAG 169157 ||| || ||| || |||||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCAG 140792 >seq3792 Length=366655 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 167441 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGC 167500 ||||||| | ||||||||||| ||||| ||||||||| || |||||||| ||||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 167501 ATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCT 167560 ||||||| ||| | |||| ||| | |||||||| |||||| |||| |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 167561 TGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCA 167599 |||||||||||||| ||||| | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq467 Length=265627 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||| | || ||||| ||||| ||||| ||| | |||| ||| ||| || | Sbjct 211255 TTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATT 211196 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 |||||||| || | ||||||||||| || ||||||||||||||||| || ||| Sbjct 211195 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 211136 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 || ||||||||||||||||| ||| | ||||||| ||| Sbjct 211135 AACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq164 Length=700310 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 169320 CGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACG 169379 ||||| || || |||||||||||||| || | |||||||| |||||||| ||||| || Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 169380 TTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGAT 169439 || || || || || || | || || |||||| || | || ||| | ||| || ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 169440 CAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAA 169489 || |||||||| || |||| ||||| ||||| || || || || || || Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAA 564032 >seq3761 Length=231418 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 167242 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATG 167301 ||||||| || | || || || |||||||| |||||||| || ||||| | ||| | Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAG 108236 Query 167302 CTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACA 167361 |||| ||| | |||||||| || || |||||||| || | | || || |||||||||| Sbjct 108237 CTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACA 108296 Query 167362 ATGGTGGTCCTTTCCAACT 167380 | |||||||||| | |||| Sbjct 108297 ACGGTGGTCCTTACGAACT 108315 >seq1308 Length=500924 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| || | ||||||||||| || ||||||||||||||||| || ||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 ||||||||||||||||| ||| | ||||||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq595 Length=533780 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 169251 ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 169310 ||||| || || || || | || | |||| ||| | || || || | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 169311 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 169370 | || | ||||| || || |||||||||||||| || | |||||||| |||||||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 169371 TTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCA 169430 ||||| || || || || || || || | || || |||||| || | || ||| | ||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 169431 CCTATTGATCAACCTCATGA 169450 || ||||| |||||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq2371 Length=186017 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 167167 CAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGT 167225 ||||||| || || ||||| || || || | | ||||||||||| || || || ||| Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 167226 ATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 167285 ||||| ||||| || ||||||| || | || || || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 167286 GTTCCTTCTTCTAATGCTATTGGTCTTCACT 167316 ||||| | ||| ||||| ||| | |||| Sbjct 41111 ATTCCTACCTCTGCAGCTATCGGTTTACACT 41141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560579009558800