Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq467 123 4e-23 seq3761 111 2e-19 seq1308 93.3 6e-14 seq3282 89.7 8e-13 >seq467 Length=265627 Score = 123 bits (136), Expect = 4e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | || ||||| ||||| ||||| ||||| || ||| ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| |||||||| || || | ||| | || |||||||||||||| ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || |||||||||||||||||||| ||||||| ||||||| |||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAA 211097 >seq3761 Length=231418 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 215448 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507 |||||||| | | || || || |||||||| ||||||||| || | |||| || | Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAG 108236 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 215567 | ||||| ||||||||||||||||| |||||||| || | ||||| |||||| | |||| Sbjct 108237 CTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACA 108296 Query 215568 ATGGTGGACCTTTCCAACT 215586 | ||||| |||| | |||| Sbjct 108297 ACGGTGGTCCTTACGAACT 108315 >seq1308 Length=500924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || || | ||| | || |||||||||||||| ||||| || |||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 |||||||||||||| ||||||| ||||||| |||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGAA 59656 >seq3282 Length=366234 Score = 89.7 bits (98), Expect = 8e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 216090 GTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACT 216149 |||| ||| ||||| | ||| || |||||||| |||||| | || ||||| |||| Sbjct 190887 GTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACT 190946 Query 216150 TCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTA 216209 | ||||| ||||| || ||| ||| || ||| |||||||| || || | | Sbjct 190947 TTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCA 191006 Query 216210 ACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCAC 216256 || | || |||||||||||||| ||||| || |||||||||||| Sbjct 191007 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745043069967760