Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2878 288 1e-72 seq467 161 1e-34 seq3282 136 5e-27 seq1308 125 9e-24 seq3761 118 1e-21 seq3792 107 2e-18 seq2371 102 1e-16 seq164 102 1e-16 seq434 84.2 3e-11 >seq2878 Length=397857 Score = 288 bits (318), Expect = 1e-72 Identities = 354/484 (73%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 183351 TAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTT 183410 ||| ||| | || || ||||| || || || || | | | | ||||||| | || || Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 183411 ACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTG 183470 | | ||||| ||||| | ||||| || ||| || ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 183471 GAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGA 183530 || |||||| || || || ||||| ||||| | || || || ||| | ||||| ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 183531 ACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 183590 ||||||| | | || | |||||||| ||||| |||||||| ||||| |||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 183591 TGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACC 183650 ||||||||| ||| || ||||| ||||| | || || || ||||| |||||||| Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 183651 TAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTG 183710 |||||| || ||||| ||||| |||||||| | | || |||| || || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 183711 GACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAG 183770 ||| |||||||| |||||||||||||| || ||||| | |||| | || || | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 183771 TGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACAC 183830 || || || |||| || || |||||||| || | ||||||||| || |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 183831 ATTC 183834 |||| Sbjct 140768 ATTC 140771 >seq467 Length=265627 Score = 161 bits (178), Expect = 1e-34 Identities = 150/190 (79%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 182610 GGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 182669 ||| || ||| ||||| |||||| | || ||||| ||||| ||||| || | |||| Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 182670 GGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATG 182729 |||| |||||||| ||||||||||||| ||| | | ||||||||| ||||||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 182730 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTCA 182789 |||||||||||||| |||||||| ||||||||||| ||||| | ||||||| ||| | Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---A 211097 Query 182790 ACTCCTGTTG 182799 |||||| || Sbjct 211096 GCTCCTGCTG 211087 >seq3282 Length=366234 Score = 136 bits (150), Expect = 5e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 182589 GGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAAC 182648 || || ||||| || || | ||| || ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 182649 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTG 182708 || ||||| || | |||| |||| |||||||| ||||||||||||| ||| | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 182709 AACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 182756 ||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 125 bits (138), Expect = 9e-24 Identities = 105/128 (82%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 182672 TCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGA 182731 ||| |||||||| ||||||||||||| ||| | | ||||||||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 182732 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTCAAC 182791 |||||||||||| |||||||| ||||||||||| ||||| | ||||||| ||| | | Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGC 59654 Query 182792 TCCTGTTG 182799 ||||| || Sbjct 59653 TCCTGCTG 59646 >seq3761 Length=231418 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 181942 CCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCT 182001 ||||| ||||||| || | || || || |||||||| ||||||||| || | || ||| Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 182002 CCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGC 182061 | || || ||| | ||||||||||| || ||||||||||| || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 182062 TGTATAACGGTGGTCCTTTCCAACT 182086 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3792 Length=366655 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 182147 TTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGC 182206 |||||| |||||||||||||| ||||| ||| ||||| || |||||||| ||||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 182207 ATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCT 182266 ||||||| ||||| |||| ||| | |||||||| ||||| || | ||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 182267 CGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCA 182305 || ||||| || || ||||| | ||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq2371 Length=186017 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 181887 TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTA 181946 ||||| ||||||| | ||||| |||||||| ||||| ||||||||||| ||||| ||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 181947 GCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTC 182002 ||||||| || | || || || |||||||| ||||||||| || | || |||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTC 41121 >seq164 Length=700310 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 184012 AATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 184071 ||| | ||||| || |||||||| ||||| || | |||||||| |||||||||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 184072 GAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCT 184131 || || || || ||||| || || | | |||||||| | | || ||| | ||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 184132 TCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGT 184172 ||||| || ||||| ||| || |||| ||||||||||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGT 564017 >seq434 Length=438060 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/166 (72%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 183574 TTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCT 183633 || ||||| |||| |||||||||| | | | || ||||| ||| | | | || Sbjct 407136 TTTTCTGGACCTACTGCTGTTTTTTTATCTATCTTTCTTATTTATATTTTAGTAAAATCA 407077 Query 183634 TCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTT 183693 |||||||||||||||||||| | ||||| ||||| |||||||| || | || || Sbjct 407076 GGTTGGTTCTTTGCACCTAGTTTTGATGTAGCTGCAATTTTTAGATT--TAATCTTTATT 407019 Query 183694 ---CAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGG 183736 || | || || |||| ||| |||||||| || |||||||||| Sbjct 407018 TTCCAAGTCTTTCATAACTAGACTTTAAACCCATTTCATATGATGG 406973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611664367670600