Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2878 269 3e-67 seq467 145 9e-30 seq164 138 1e-27 seq3282 134 2e-26 seq3792 132 5e-26 seq3761 125 8e-24 seq595 122 1e-22 seq1308 105 8e-18 seq2371 96.9 4e-15 seq1921 84.2 2e-11 >seq2878 Length=397857 Score = 269 bits (298), Expect = 3e-67 Identities = 371/516 (72%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 166332 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTT 166391 || ||| | ||||| || ||||||||||||||| || | | | ||||||| |||| | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 166392 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGG 166451 | ||||| ||||| || ||||| ||||| | ||||||||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 166452 GCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAA 166511 | ||||| ||||| || ||||| |||||| |||| || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 166512 ATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGC 166570 | ||| | ||| | | | ||||| || |||||||| || |||||||| |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 166571 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 166630 ||| || || ||| ||||| || || ||| | || ||||| |||||||||| || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 166631 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTG 166690 ||| || || | ||||| || |||| | ||||| ||||||| || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 166691 GACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTC 166750 ||| | |||||||| |||||||||||||| || || || | |||| ||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 166751 TGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATAC 166810 || || || |||| ||| || ||||| ||| | | | |||||||||| ||||| || Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 166811 TTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAAC 166846 ||| || || || | ||||| ||||| ||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCAGTGGGAAGCAAC 140803 >seq467 Length=265627 Score = 145 bits (160), Expect = 9e-30 Identities = 145/185 (78%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 || |||| | ||| | ||||| ||||| |||||| | || ||||| ||||| ||||| || Sbjct 211283 CAATGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATC 211224 Query 165630 TATTGTTGATAGTCA-GAACAA--AATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686 | ||||||| ||||| | | ||| | | ||||||||||| || | |||||||| Sbjct 211223 TGTTGTTGACAGTCAAGGTCGTGTAATTAAC---ACTTGGGCTGATATTATCAACCGTGC 211167 Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746 | || |||||||||||||||||||| |||||||||||||||||||| || ||| | || Sbjct 211166 TAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGC 211107 Query 165747 TGCTG 165751 ||||| Sbjct 211106 TGCTG 211102 >seq164 Length=700310 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 166998 CGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACC 167057 ||||| || || ||||||||||||||| | | |||||||||||||| || |||||||| Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 167058 TTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGAT 167117 || ||||| || || ||| | || ||||| ||||| | ||||||||||| || ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 167118 CAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCC 167158 || |||||||| | | | |||||||| || |||||||| || Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq3282 Length=366234 Score = 134 bits (148), Expect = 2e-26 Identities = 134/171 (78%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 165559 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAAC 165618 ||||| ||||| |||||| | ||| | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 165619 TTCAACCAGTCTATTGTTGATAGTCA-GAACAA--AATCATCCCTACTTGGGCTGACGTT 165675 || ||||| ||| ||||||| ||||| | | ||| | | ||||||||||| || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAAC---ACTTGGGCTGATATT 191002 Query 165676 CTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCAC 165726 | ||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 191003 ATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3792 Length=366655 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 165117 TTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGC 165176 |||||| | |||||||||||||||||| || |||||| || || || |||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 165177 TGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCT 165236 | | || |||||| || |||| ||| | |||||||| |||||||| || ||||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 165237 TGGTATCTCTGGTACTTTTAA 165257 ||||||||||||||||| || Sbjct 281934 AGGTATCTCTGGTACTTTCAA 281954 >seq3761 Length=231418 Score = 125 bits (138), Expect = 8e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 164920 GGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCA 164979 |||||||| | ||||| || |||||||| ||||||||| | |||| | ||| || Sbjct 108179 GGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAGCT 108238 Query 164980 ATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAAC 165039 ||||| | |||||||| ||||||||||||||||| | | |||||||||||||||||| Sbjct 108239 ATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACAAC 108298 Query 165040 GGTGGTCCTTAC 165051 |||||||||||| Sbjct 108299 GGTGGTCCTTAC 108310 >seq595 Length=533780 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 166929 ATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCT 166988 ||||| || || || || | || | |||| ||| | || || || | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 166989 CTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAG 167048 | || | ||||| || || ||||||||||||||| | | |||||||||||||| || Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 167049 TTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCA 167108 |||||||| || ||||| || || ||| | || ||||| ||||| | ||||||||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 167109 ACTATCGATCAACCTCATGA 167128 || ||||| |||||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq1308 Length=500924 Score = 105 bits (116), Expect = 8e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| || | ||||||||| || |||||||||||||||||||| |||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||||||||||| || ||| | ||||||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTG 59661 >seq2371 Length=186017 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 || |||| ||| || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 | |||||||| | ||||| || |||||||| ||||||||| | |||| | ||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCA 41125 Query 164977 GCAATCGGACTTCACT 164992 || ||||| | |||| Sbjct 41126 GCTATCGGTTTACACT 41141 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165691 CTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 || |||||||||||||||||||| |||||||||||||||||||| || ||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 165751 G 165751 | Sbjct 54827 G 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563631651690880