Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3792 134 2e-26 seq467 105 8e-18 seq3761 104 3e-17 seq3282 86.0 7e-12 seq1308 82.4 9e-11 >seq3792 Length=366655 Score = 134 bits (148), Expect = 2e-26 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 170044 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCA 170103 |||||||||||||||||||||||||| ||| |||||||| |||||||| | || || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 170104 TTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTA 170163 ||||| ||||| | || ||| | ||||| ||| |||||||||||| |||||| || Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 170164 GGTATCTCAGGTACATTTAACTTCATG 170190 |||||||| ||||| || || |||||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATG 281961 >seq467 Length=265627 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 170506 GGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 ||||| |||| ||||| || ||| | ||||| |||||||| ||||| || | || || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 170566 GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625 | ||| ||| || || ||||| || || | ||| | || ||||| |||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 ||||| |||||||| ||||| || ||||||||||| || ||||| || ||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3761 Length=231418 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169840 GTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCA 169899 ||| | ||||| | | || || || |||||||| |||||||| || |||| | || Sbjct 108173 GTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 108232 Query 169900 AACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTG 169959 || |||||| | |||||||| |||||||||||||| || || | ||||| |||||| Sbjct 108233 GCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTG 108292 Query 169960 TATAACGGTGGTCCTTA 169976 || |||||||||||||| Sbjct 108293 TACAACGGTGGTCCTTA 108309 >seq3282 Length=366234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 170488 ATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTC 170547 || ||||| ||| | | ||||| |||| ||||| || ||| | ||||| |||||||| Sbjct 190889 ATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTT 190948 Query 170548 AACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAAC 170607 ||||| || | || || | ||| ||| || || ||||| || || | ||| Sbjct 190949 AACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAAC 191008 Query 170608 AGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652 | || ||||| ||||||||||| |||||||| ||||| || ||| Sbjct 191009 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 170587 ACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAAT 170646 || ||||| || || | ||| | || ||||| ||||||||||| |||||||| ||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 170647 GCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 || ||||||||||| || ||||| || ||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582817859472800