Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3761 114 1e-20 seq2371 111 2e-19 seq3282 107 2e-18 seq467 104 3e-17 seq3792 102 9e-17 seq38 82.4 9e-11 >seq3761 Length=231418 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 84659 AACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAAT 84718 || ||||| ||||| ||||| || || | |||||| || | | || ||||||||||| Sbjct 108319 AAAAAGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAAT 108260 Query 84719 AGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTT 84778 ||| ||||| |||| ||| ||||| ||||| |||| | ||||||||||||||||| Sbjct 108259 AGGGTAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTT 108200 Query 84779 GTTTCCGTACATGAGAGAACCAG 84801 |||||||| | |||||||||| Sbjct 108199 ATTTCCGTAAAGAAGAGAACCAG 108177 >seq2371 Length=186017 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 84729 TGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTAC 84788 |||| ||| ||||| ||||| |||| | ||||||||||||||||| |||||||| Sbjct 41139 TGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGTAA 41080 Query 84789 ATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACG 84848 | |||||||||| || || |||||||||||||||||||| || || || || ||| Sbjct 41079 AGAAGAGAACCAGATACAGGTTCACGGATACCGTCAATATCTACAGGAGGAGCTGCAATA 41020 Query 84849 AATGCAATGATGAA 84862 || ||||| ||||| Sbjct 41019 AAAGCAATAATGAA 41006 >seq3282 Length=366234 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || ||||||||||| ||||| |||||||||||||| ||||| || | | ||| ||| Sbjct 191052 TGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGCC 190993 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 || || || | ||||| ||| || || |||| | || || |||||||| ||||| Sbjct 190992 CAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATTT 190933 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCC 84160 | || || ||||| ||||| | ||| | ||||| ||||||||| || Sbjct 190932 AAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 >seq467 Length=265627 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || ||||||||||| ||||| |||||||||||||| ||||| || | Sbjct 211119 GGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATA 211178 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | ||||| ||| || || |||| | || || |||||| Sbjct 211179 ATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTA 211238 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 || ||||| | || || ||||| ||||| | ||| | |||| Sbjct 211239 AAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCA 211280 >seq3792 Length=366655 Score = 102 bits (112), Expect = 9e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 84443 CTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 ||||| ||| |||| | ||||| || || |||||||| | ||||| || || ||||| Sbjct 281973 CTGGAGAACAGTCATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAA 281914 Query 84503 AGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGA 84562 | ||||| || | ||| || | | ||| ||||||| || || ||||||||||| || Sbjct 281913 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGA 281854 Query 84563 GTAAGCAACACAGATCCATGGACGCATACCGAGACGATA 84601 || |||||| ||||| ||||||||||| | ||| || Sbjct 281853 ATATGCAACAGCAATCCAAGGACGCATACCTAAACGGTA 281815 >seq38 Length=546171 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 ||| | |||||||| ||||||| || || |||| ||||| | ||| | ||||| |||| Sbjct 81872 TGAGTAAAGTTAAAACCATTCAAGTTGAAATCCATAGTGCTGAAACCTAAAGCAGTAAAC 81931 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAG 84182 |||| || || |||||||||||||||||| Sbjct 81932 CAAAATCCTACAACTGGCCAAGCAGCCAAG 81961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571244058013960