Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_016435.1 Length=65766 Score E Sequences producing significant alignments: (Bits) Value seq1013 89.7 2e-13 >seq1013 Length=3715 Score = 89.7 bits (98), Expect = 2e-13 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 39924 ATCGGGTCAATCTCGGTGATGCGCAGGAGGTAGCAGATCTCCGACCCGGCGGCCGACCCG 39983 |||||||| | |||||||||| ||||| |||| || | ||| || || ||||| || Sbjct 1280 ATCGGGTCGAGGTCGGTGATGCCCAGGACGTAGGCGACCAGCGAGCCCGCCGCCGAGCCA 1221 Query 39984 CGGCCGGGACCGACACCGATGGGGTCGGGGTGGTCCTTGGCAAACCGGACGAGGTCCGCG 40043 |||||||| ||| | |||| | | | |||||| | ||| |||||||||| Sbjct 1220 CGGCCGGGGCCGCAGCGGATGCCGACCGA------CTTGGCGTGCTGGATGAGGTCCGCG 1167 Query 40044 GTGACCAGGAAGTAGTCGCAGAACCCCTTCTCTTCGAGCAGGCCGAACTCGTAATGGATC 40103 || |||||||||||| || | | ||| ||| || | ||||| |||||| | | | Sbjct 1166 GTCACCAGGAAGTAGCCGGGGTAGCCCATCTTGATGATGACGCCGACCTCGTAGTTGGCC 1107 Query 40104 TGGTCGAGGTACTCCTGGGTG 40124 || | |||||| || |||| Sbjct 1106 TGCTGCCGGTACTTCTCGGTG 1086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210315795408639