Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq467 122 3e-23 seq3282 104 7e-18 seq3792 82.4 2e-11 >seq467 Length=265627 Score = 122 bits (134), Expect = 3e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||||| |||| ||||| || ||| |||||||||||||||||||||| || || || || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 26678 GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTT 26737 | | || |||| || ||||||||| | | ||||| |||||||| || | Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 26738 GAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || ||||| ||||| ||||| || || |||||||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGC 211107 >seq3282 Length=366234 Score = 104 bits (114), Expect = 7e-18 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26597 GGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAAC 26656 || || ||| | || || | |||||| |||| ||||| || ||| |||||||||||||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 26657 TTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTA 26716 |||||||| || || || || | | || |||| || ||||||||| | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 26717 AACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCA 26763 ||||| |||||||| || | ||||||||||| || ||||| ||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq3792 Length=366655 Score = 82.4 bits (90), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 26155 TTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGC 26214 |||| | |||| ||| | || ||||| |||||||||| |||| ||| | | || || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 26215 TCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCT 26274 | || || ||||| | || ||| | || ||||| ||||| || || |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 26275 TGGTATCTCTGGTACTTTTAACTTTATG 26302 ||||||||||||||||| || || ||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146719191790488