Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3792 122 3e-23 seq467 118 3e-22 seq1308 104 7e-18 seq3282 95.1 4e-15 >seq3792 Length=366655 Score = 122 bits (134), Expect = 3e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 36455 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 36514 ||| ||||||||||| || || ||||| | ||||||||| || |||||||| ||||| || Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 36515 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACA 36574 || |||||||| ||||| |||||| || || ||||| || |||||||| || ||| Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAATATGCAACAGC 281842 Query 36575 TATCCACGGCCTCATACCTA 36594 ||||| || | |||||||| Sbjct 281841 AATCCAAGGACGCATACCTA 281822 >seq467 Length=265627 Score = 118 bits (130), Expect = 3e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||| | ||| ||||||||||| | || | || | ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || || || || || |||||||| || || | || |||||||||||| Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTG 211265 >seq1308 Length=500924 Score = 104 bits (114), Expect = 7e-18 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | || |||||||| | ||| ||||||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 >seq3282 Length=366234 Score = 95.1 bits (104), Expect = 4e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35993 GTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGC 36052 ||| |||||||| ||||||||||||||||| || | || |||||||| | ||| ||||| Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 36053 CCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTT 36112 |||||| | || | || | ||||| || || || || |||||||| || || Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 36113 GAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 36157 | || |||||||||||| || || | ||| |||| ||| || Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAAT 190889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150447008645498