Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq467 129 2e-25 seq3792 113 1e-20 seq3282 109 2e-19 seq1308 102 2e-17 seq3761 82.4 2e-11 seq1921 80.6 8e-11 >seq467 Length=265627 Score = 129 bits (142), Expect = 2e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || |||||||||||||| || ||||| ||||| ||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | | ||| ||||||||| || | | ||| | |||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCC 5361 || || || || || |||||||| || || | || |||||||||||| ||| || Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3792 Length=366655 Score = 113 bits (124), Expect = 1e-20 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||| || || ||||||||||||||||| | ||||||||| || ||||||||| || || Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | |||||| | || || || | ||||| | || ||||| || ||||||||||| || Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAG-CAGCAGCAACTGGAGCTGAATATGCAACAG 281843 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACT 5826 |||||| || ||||| ||||| | |||||| Sbjct 281842 CAATCCAAGGACGCATACCTAAACGGTAACT 281812 >seq3282 Length=366234 Score = 109 bits (120), Expect = 2e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 5215 GTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGC 5274 |||||| || ||||| ||||| ||||||||||||||||| |||||||| | | ||| || Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 5275 CCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTT 5334 ||||||| || | | ||| | |||||| || || || || |||||||| || || Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 5335 AAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 5379 | || |||||||||||| ||| || | || |||| ||| || Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAAT 190889 >seq1308 Length=500924 Score = 102 bits (112), Expect = 2e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || |||||||||||||| || ||||| ||||| ||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTG 5281 |||||||| |||||||| | | ||| ||||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTG 59752 >seq3761 Length=231418 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 5885 AGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGA 5944 |||| ||| || || || ||||| | ||||||||| | | || |||||||| || || Sbjct 108315 AGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGG 108256 Query 5945 TAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTT 6004 ||||||||||| || || || ||| | || | || || || || |||||||| ||| Sbjct 108255 TAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTT 108196 Query 6005 CCATAGAGTAGAGATCCTGCGACGG 6029 || || || ||||| || | |||| Sbjct 108195 CCGTAAAGAAGAGAACCAGATACGG 108171 >seq1921 Length=72791 Score = 80.6 bits (88), Expect = 8e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| |||| || || |||||||||||||| || ||||| ||||| ||||||||||||| Sbjct 54827 CAGCAGCTAAGTCCAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAA 54768 Query 5250 GGTTGGC 5256 ||||||| Sbjct 54767 GGTTGGC 54761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152642100802182