Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq467 123 8e-24 seq3792 118 3e-22 seq1308 109 2e-19 seq3282 95.1 4e-15 seq3761 86.0 2e-12 seq1921 80.6 8e-11 >seq467 Length=265627 Score = 123 bits (136), Expect = 8e-24 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || |||||||| | ||| ||||||||||| | || | || | ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 || || || || || |||||||| || || | || |||||||||||| Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTG 211265 >seq3792 Length=366655 Score = 118 bits (130), Expect = 3e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 25935 CATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 25994 ||| ||||||||||| || || ||||| | ||||||||| || |||||||| ||||| || Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 25995 AAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACA 26054 || |||||||| ||||| |||||| || || ||||| || |||||||| || ||| Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAATATGCAACAGC 281842 Query 26055 TATCCACGGCCTCATGCCTA 26074 ||||| || | ||| |||| Sbjct 281841 AATCCAAGGACGCATACCTA 281822 >seq1308 Length=500924 Score = 109 bits (120), Expect = 2e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538 || | || |||||||| | ||| ||||||||||| Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 >seq3282 Length=366234 Score = 95.1 bits (104), Expect = 4e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 25473 GTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGC 25532 ||| |||||||| ||||||||||||||||| || | || |||||||| | ||| ||||| Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 25533 CCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTT 25592 |||||| | || | || | ||||| || || || || |||||||| || || Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 25593 GAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 25637 | || |||||||||||| || || | ||| |||| ||| || Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAAT 190889 >seq3761 Length=231418 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 26139 AATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 26198 || ||||| || || |||||||| |||||||| || || | | ||||||||||| || Sbjct 108319 AAAAAGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAAT 108260 Query 26199 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTT 26258 ||||||||||| | |||||| || ||| | || | || || || || |||||||| Sbjct 108259 AGGGTAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTT 108200 Query 26259 GTTTCCATAGAG 26270 ||||| || || Sbjct 108199 ATTTCCGTAAAG 108188 >seq1921 Length=72791 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||||||||||||| |||||||| ||||||||||||||||| || | || | Sbjct 54822 GCTAAGTCCAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTG 54763 Query 25513 GC 25514 || Sbjct 54762 GC 54761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151986133029412