Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq470 98.7 8e-16 >seq470 Length=504015 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937 |||||||| |||||||| |||||||| |||||| ||| ||||| ||||||| || | Sbjct 117213 ACGTGAGCAATCATGTAGGTGAGGAGGGAGTAGGAGGCTATGTTGTAGGGTACTCCTAAT 117154 Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997 ||||| || | || | ||||| | ||||| || |||||||||| | |||||||||| Sbjct 117153 CCCATATCACATGAGCGTTGGTACATTTGACATGATAGCTCTCCGTTGGCCACGTAAAAC 117094 Query 29998 TG 29999 || Sbjct 117093 TG 117092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408596997628301