Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3792 127 2e-24 seq467 127 2e-24 seq3282 102 9e-17 seq1308 91.5 2e-13 >seq3792 Length=366655 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 162852 TTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGC 162911 |||||| |||||||||||||||||||| ||||||||| || || ||||| |||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 162912 ATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCT 162971 ||||| |||||| |||| ||| | |||||||| |||||| |||| |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 162972 TGGTATTTCTGGTACTTTTAACTACATG 162999 ||||| ||||||||||| || | |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 >seq467 Length=265627 Score = 127 bits (140), Expect = 2e-24 Identities = 131/170 (77%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGT 163380 |||||||| |||||| | || ||||| ||||| |||||||| || |||||| |||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| |||||||| ||||| | ||| | || ||||||||||||||| Sbjct 211204 CGT---GTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||| || ||||| |||||||||||||| || ||| | ||||||| ||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 102 bits (112), Expect = 9e-17 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||| ||||| | ||| | |||||||| |||||| | || ||||| ||||| Sbjct 190889 ATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTT 190948 Query 163357 AACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| || |||||| |||| || || ||| |||||||| ||||| | Sbjct 190949 AACCAATCTGTTGTTGACAGTCAAGGTCGT---GTAATTAACACTTGGGCTGATATTATC 191005 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 163461 ||| | || |||||||||||||||||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| | ||| | || |||||||||||||||||||| || ||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||||||||||| || ||| | ||||||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553056198602280