Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2878 226 3e-54 seq467 140 4e-28 seq3282 127 2e-24 seq164 105 8e-18 seq1308 102 9e-17 seq3761 100 3e-16 seq3792 96.9 4e-15 seq595 96.9 4e-15 >seq2878 Length=397857 Score = 226 bits (250), Expect = 3e-54 Identities = 333/469 (71%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 164777 TAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 164836 ||| ||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 164837 ACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATG 164896 | | ||||| ||||| | || || |||| || ||||||||| | || || |||| Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 164897 GAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGA 164956 || ||| || ||||| || ||||| || ||| |||| || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 164957 GCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 165015 || || | ||| | | | |||||||| ||||| |||||||| ||||| ||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 165016 CTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTC 165075 |||||||||| || || ||||| || || | || || || |||||||||| || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 165076 CGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACT 165135 | ||||| || || ||||| |||||||| | | || ||||||| || || |||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 165136 GGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTAT 165195 |||| | ||||| ||||||||||||||||| || || | || || | || | ||| Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 165196 CTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGA 165244 || ||||| || | || ||||| ||||| |||| || ||||| || Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGA 140755 >seq467 Length=265627 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 ||||| ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 |||||||| | ||||||||||| || | | ||||| ||| || |||||||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 |||||||| |||||||| ||||||||||| || || | ||||||| ||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 163687 GGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 163746 || || ||||||||||| | || | ||||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 163747 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTT 163806 || ||||| || | |||| |||| |||||||| | ||||||||||| || | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 163807 AACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 163854 ||||| ||| || |||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq164 Length=700310 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 165444 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 165503 ||||| |||||||| || || || || | |||||||| |||||||||||||| || Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 165504 TTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 165563 || || || ||||| || |||| |||||||| | | |||||| ||||| || ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 165564 CAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCC 165604 || || |||||||| || | |||||||| || || |||| Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq1308 Length=500924 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 163770 TCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGA 163829 ||| |||||||| | ||||||||||| || | | ||||| ||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 163830 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 |||||||||||| |||||||| ||||||||||| || || | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 163040 CCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTT 163099 |||| ||||||| || | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 163100 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGC 163159 | || || ||| | |||||||| || || |||||||| || || ||||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 163160 TGTATAACGGTGGTCCTTTCCAACT 163184 |||| ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3792 Length=366655 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 163246 TATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCA 163305 || || ||||||||||| || ||||| ||| ||||| || || || ||||| || || Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGCT 281874 Query 163306 TCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTT 163365 | || || ||| || |||| ||| | |||||||| |||||| |||| ||||| | Sbjct 281875 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTTA 281934 Query 163366 GGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCA 163403 || |||||||| || ||||| | |||| ||| |||| Sbjct 281935 GGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq595 Length=533780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 165412 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 165471 ||||||| || | ||| | ||| | || | ||||| |||||||| || || || | Sbjct 284346 CTATTGGGGTTGTAGGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAA 284287 Query 165472 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 165531 | | |||||||| |||||||||||||| || || || || ||||| || |||| |||| Sbjct 284286 TTCGTGCAGCAGAGGATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATG 284227 Query 165532 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGA 165574 |||| | | |||||| ||||| || ||||| || ||||| Sbjct 284226 AAGGTATTAGAGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 284184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563180475023560