Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2878 253 2e-62 seq3792 131 2e-25 seq3761 122 9e-23 seq467 113 5e-20 seq164 104 2e-17 seq2371 95.1 1e-14 seq595 95.1 1e-14 seq3282 91.5 2e-13 seq263 87.8 2e-12 >seq2878 Length=397857 Score = 253 bits (280), Expect = 2e-62 Identities = 352/493 (71%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 9985 TAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 10044 |||||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 10045 ACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTG 10104 | | ||||| ||||| | || || ||||| || ||| ||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 10105 GGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGA 10164 | ||||||| || || || || || || || ||||| |||||||||||||| || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 10165 GCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGC 10224 || || |||| || | | || ||||| ||||| || ||||||||||| |||||||| Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 10225 TGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCC 10284 ||||||||| |||||| || || ||||| | ||||| || ||||||| ||||| || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 10285 GAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTG 10344 ||||| || || || || ||||| | || |||| || | || ||||||||||| || Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 10345 GACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATC 10404 ||| | || || |||||||||||||| || ||||| | | || | || || ||| Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 10405 AGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACAC 10464 ||||| ||||| | ||||| || || || | | | ||||||| || |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 10465 TTTCAAAGCTTTT 10477 ||| |||||| Sbjct 140768 ATTCCGTGCTTTT 140780 >seq3792 Length=366655 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 8601 TTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGC 8660 |||||| | || |||||||||||||| ||||||||| || ||||| ||||| ||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 8661 TTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCT 8720 | ||||||| ||| | |||| ||| |||||||||| ||||| || ||||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 8721 TGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 |||||||| ||||| ||||| | ||| ||| ||||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCAG 281973 >seq3761 Length=231418 Score = 122 bits (134), Expect = 9e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 8402 CTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACG 8461 |||| ||||| | ||||| || |||||||| |||||||| || |||| | |||| | Sbjct 108177 CTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCTGCAG 108236 Query 8462 CAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACA 8521 | || || | ||||||||||| || |||||||| |||||| ||||||| ||| | |||| Sbjct 108237 CTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGTTGTACA 108296 Query 8522 ACGGTGGTCCTTACCAGCTT 8541 |||||||||||||| | ||| Sbjct 108297 ACGGTGGTCCTTACGAACTT 108316 >seq467 Length=265627 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9073 ACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGA 9132 || |||||||||||| | ||||| || ||||| ||||| || || | ||| | ||||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 9133 CGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATG 9192 || || | ||||| ||||| || | | ||||| || || ||||||||||| ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 9193 CACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 || ||| | ||||| ||||||||||| || ||| | || |||| ||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq164 Length=700310 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 10646 AATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTT 10705 ||| | ||||| ||||||||||| || ||||| || | || |||| ||||| |||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 10706 GAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCA 10765 || || || ||||| || ||||| | | || |||||| || | || ||||||||| | Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 10766 GTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || || || |||| |||| |||||||| || ||||| || Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq2371 Length=186017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 ||||||| || || |||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCT 8457 |||| ||||| | ||||| || |||||||| |||||||| || |||| | |||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCTCT 41122 >seq595 Length=533780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 10583 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 10642 ||||| || ||||| || | || | |||| | ||||||| | | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 10643 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAA 10702 | ||| | ||||| ||||||||||| || ||||| || | || |||| ||||| ||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 10703 TTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCA 10762 ||||| || || ||||| || ||||| | | || |||||| || | || ||||||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 >seq3282 Length=366234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 9043 GGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAAC 9102 || || |||||||| || | || || || |||||||||||| | ||||| || ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 9103 TTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTT 9162 || ||||| || || | ||| | ||||| || || | ||||| ||||| || | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 9163 AACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACAC 9210 ||||| || || ||||||||||| ||||| ||| | ||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq263 Length=1363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 32003 GCCGAGCACGGTTGGTTACATTGCGGACC-AGCTGGAGCAGGTCATTTTGTAAAGATGGT 32061 ||||| | ||||| | |||||||| || ||| || || ||||| || || |||||||| Sbjct 1289 GCCGAACGCGGTTATCTGCATTGCGGCCCGAGC-GGCGCCGGTCACTTCGTCAAGATGGT 1231 Query 32062 TCATAATGGAATCGAATACGGAATTATGCAAGCATACGCCGAAGGATTTAAC 32113 ||||| || ||||||||||| || ||||| || || |||||||| || ||| Sbjct 1230 CCATAACGGCATCGAATACGGCATGATGCAGGCCTATGCCGAAGGCTTCAAC 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516453291528000