Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2625 91.5 1e-13 seq487 87.8 2e-12 >seq2625 Length=346021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | ||||| |||||||||||| ||| || ||| Sbjct 280423 ATGCAAATTTTCGTTAAAACTCTGACGGGGAAAACCATTACCCTCGAGGTCGAGAGTTCT 280482 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| || || |||||| | ||| |||||| Sbjct 280483 GACACCATCGACAATGTCAAGACTAAGATCCAGGATAAGGAGGGAATCCCCCCAGATCAG 280542 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | ||||| || ||||||||| | || || || ||||||| || ||| Sbjct 280543 CAGAGGTTGATCTTCGCCGGCAAACAACTAGAGGACGGCCGGACGCTGGCCGACTACAAC 280602 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || || || || | || | ||||| | ||||| || Sbjct 280603 ATTCAGAAAGAGTCCACGCTTCATCTTGTTCTGAGATTGAGGGGAGGCAT 280652 >seq487 Length=466406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | ||||| |||||||| || ||| ||| || Sbjct 183332 AATGCAAATCTTCGTCAAGACTCTGACGGGGAAAACCATCACTCTGGAAGTGGAGAGCTC 183391 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || |||||| ||||| |||||| | || || || Sbjct 183392 TGACACCATCGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCCGACCA 183451 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| || | ||||| || ||||| || |||||||| | || |||||||||| || Sbjct 183452 GCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACACTGGCCGATTACAA 183511 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||| || || |||| |||| || | | |||||||| Sbjct 183512 CATTCAAAAAGAGTCGACGTTGCATCTGGTGTTGCGTCTGCGAGGAGG 183559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425383351222923