Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3072 118 7e-21 seq2625 111 1e-18 seq4073 105 4e-17 seq4017 102 5e-16 seq487 93.3 3e-13 seq2226 89.7 3e-12 seq2334 87.8 1e-11 >seq3072 Length=975934 Score = 118 bits (130), Expect = 7e-21 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| || | || ||||| | || |||| | | ||||||||| |||||| Sbjct 272032 ACGAAGACGGAGCACCAAGTGCAAAGTGGA-TTCCTTTTGGAT-ATTATAATCCGCTAGA 271975 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| ||| || ||||||||||| |||||||| | | || || || || || ||| Sbjct 271974 ATTCTTCCATCCTCGAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATT 271915 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTC 480727 || ||||||||||||||||| || || || |||||||| | | | | || || Sbjct 271914 CCCTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAA-CCTC 271856 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || ||||| || | ||||| |||||||| || Sbjct 271855 AAGAGTAATGGTCTTACCAGTCAAGGTCTTCACGAAAATCTG 271814 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| |||||||||||||| |||||||| | | || ||||| ||||| || |||||||| Sbjct 271510 ATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTT 271451 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| ||| || ||||| || |||| | | | | ||||| || | Sbjct 271450 GTCCTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCA-CCTCAAGAGTTA 271392 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||| | |||||||| ||||| Sbjct 271391 TGGTCTTGCCCGTGAGGGCTTTAACGAAGATTTG 271358 >seq2625 Length=346021 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || | ||| ||| || | ||||||||| |||||| | Sbjct 282240 ACGAAGACGGAGCACCAAGTGCAAAGTAGATTCCTTTTGGATATTATAATCCGCTAGAAT 282181 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| || ||||||||||| || ||||| | | || || || || || ||||| Sbjct 282180 TCTTCCATCCTCGAGTTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGGGGGATTCC 282121 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||||||||||| || || || |||||||| | | | | || |||| Sbjct 282120 CTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATAGTATCTGAGCTCTCAA-CCTCAA 282062 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || ||||| || | ||||| |||||||| || Sbjct 282061 GAGTAATGGTCTTACCTGTCAAGGTCTTCACGAAAATCTG 282022 Score = 100 bits (110), Expect = 2e-15 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| |||||||||||||| |||||||| | | || ||||| ||||| || |||||||| Sbjct 281718 ATCCTCAAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTT 281659 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| ||| || ||||| || |||| | | | | ||||| || | Sbjct 281658 GTCCTGAATCTTCGTTTTCACGTTATCAATCGTGTCAGAGCTCTCCA-CCTCAAGAGTTA 281600 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| || |||||||| ||||| Sbjct 281599 TGGTCTTGCCGGTGAGGGTTTTAACGAAGATTTG 281566 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || |||| | || || | ||||| || |||||||| | || || Sbjct 281285 TTGTAGTCAGCCAGCGTTCGGCCGTCCTCCAACTGCTTACCGGCAAAAATCAACCGCTGC 281226 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || |||||||||||||| ||||| ||||| || || || |||||||| Sbjct 281225 TGATCTGGTGGAATTCCTTCCTTATCTTGGATCTTAGTCTTCACGTTGTCGATAGTATCG 281166 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| ||||| || || || |||||||| |||||||| || Sbjct 281165 GAGCTTTCAACCTCCAGGGTGATAGTCTTCCCTGTAAGAGTCTTGACGAAAATCTG 281110 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || |||||||||||||| |||||||| | | || ||||| ||||| || ||||||||| Sbjct 281945 TCCTCAAGTTGCTTTCCTGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTG 281886 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 || |||||||| ||| || ||||| || |||| | | | | ||||| || || Sbjct 281885 TCCTGAATCTTCGTTTTCACGTTGTCAATCGTGTCAGAGCTCTCCA-CCTCAAGAGTGAT 281827 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| | ||||| || ||||| || Sbjct 281826 GGTCTTACCGGTCAATGTCTTCACAAAAATCTG 281794 >seq4073 Length=488838 Score = 105 bits (116), Expect = 4e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 ||||||||| |||||||| || || ||||| || |||||||| || ||||||| Sbjct 172781 AAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCAAGAGTTCG 172840 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 |||||| |||||||| || || || || | | || ||||| |||||||| ||||| Sbjct 172841 CCCATCTTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGAATACCTTC 172900 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGG 480732 |||||| |||||||| |||||| || || || || | | | | | || || | Sbjct 172901 CTTGTCCTGAATCTTCGCTTTGACGTTGTCGATGGTGTCCGAGCTCTCGA-CCTCCAGAG 172959 Query 480733 TAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||| || || || ||||| ||||| Sbjct 172960 TGATGGTCTTGCCGGTCAGTGTTTTCACGAAGATTTG 172996 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| |||||||| || || ||||| || |||||||| || ||||||| Sbjct 173010 AGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTATAATCTGCCAGAGTTCGC 173069 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || || || || | | || || || |||||||| |||||| Sbjct 173070 CCATCTTCGAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCGGGAGGAATACCTTCC 173129 Query 480675 TTGTCTTGAATCTTTTGTTTGAC 480697 ||||| |||||||| |||||| Sbjct 173130 TTGTCCTGAATCTTCGCTTTGAC 173152 >seq4017 Length=874442 Score = 102 bits (112), Expect = 5e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620 || |||||||| || || |||||| | ||| ||||| || || |||| |||| Sbjct 473782 AGAACAAGATGCAGAGTTGATTCTTTTTGGATATTGTAATCCGCCAGGGTTCGTCCATCT 473723 Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680 || || |||||||| ||||| || | | || ||||| |||||||||||||||||||| Sbjct 473722 TCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCGGGAGGAATTCCTTCCTTGTCC 473663 Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740 || ||||| ||||||| || || || |||| | | || || || ||||| Sbjct 473662 TGGATCTTGGTTTTGACATTGTCGATGGTGTCAGAGCTTTCGACCTCGAGAGTGATAGTC 473603 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| | ||||| ||||| || || Sbjct 473602 TTCCCGGTCAAGGTCTTCACGAAGATCTG 473574 >seq487 Length=466406 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || || ||||||| | |||||| || ||||| || || || || || | || Sbjct 177214 TTATAGTCCGCGAGAGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGTCTCTGC 177155 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||||||||| |||||||||||||| |||||| || || || || Sbjct 177154 TGGTCTGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTGACATTATCGATGGTGTCG 177095 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 177094 GAGCTTTCCACCTCCAGAGTAATTGTCTTACCCGTGAGGGTCTTCACGAAGATCTG 177039 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || ||||||| | || || || ||||| || ||||| || || | || Sbjct 176758 TTGTAGTCTGCAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGC 176699 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||||||||| |||||||| ||||| || |||||| ||||| ||||| Sbjct 176698 TGGTCTGGAGGAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACGTTATCAATGGTATCG 176639 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| | || ||||| ||||||||||| || || || ||||| || Sbjct 176638 GAGCTTTCTACTTCTAAAGTGATAGTCTTACCGGTGAGTGTTTTCACAAAAATCTG 176583 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || ||||||| | |||||| || ||||||||||| || || || | || Sbjct 177442 TTGTAGTCCGCGAGAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGC 177383 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| ||||||||||| |||||||| ||| ||| || || ||||| Sbjct 177382 TGGTCTGGGGGAATCCCTTCCTTGTCCTGAATCTTAGCTTTCACATTATCGATCGTATCC 177323 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||| || || || || || || | ||| || ||||| ||||| Sbjct 177322 GAGCTTTCTACCTCAAGAGTGATCGTCTTTCCAGTCAAAGTTTTGACGAAGATTTG 177267 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || || | ||| || ||| || || || || || || || || || | | Sbjct 177709 AGACGAAGCACCAAATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCGG 177650 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| ||||| || || || | || || || || |||||||||||| Sbjct 177649 CCATCTTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCTTCC 177590 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| |||||||| || ||| || || ||||| | | | || || || Sbjct 177589 TTGTCCTGAATCTTGGCCTTCACATTATCGATCGTATCCGAGCTTTCTACCTCCAGAGTG 177530 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| |||||||| ||||| ||||| Sbjct 177529 ATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTG 177495 >seq2226 Length=1142962 Score = 89.7 bits (98), Expect = 3e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||||| || || || ||||||||||| | || ||||| ||| | Sbjct 212836 GCCATCGGTATCGATTTGGGCACGACGTACAGTTGTGTTGGAGTGTGGCAGCATGATCGC 212777 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || || || || || ||||| ||||| || || || ||||| | || || Sbjct 212776 GTCGAGATCATCGCGAACGATCAGGGTAACAGAACGACGCCTTCCTATGTGGCCTTCACG 212717 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| | ||||||||||| || |||||| || || || | || Sbjct 212716 GACACAGAGCGTCTCGTCGGAGATGCTGCGAAGAATCAAGTGGCTATGAACCCGATCAAC 212657 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || | || || || || || ||||| ||||| Sbjct 212656 ACCGTGTTCGACGCCAAGAGGTTGATCGGTCG 212625 >seq2334 Length=378061 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || || || ||||||||||| | ||| |||||| | | | Sbjct 147786 GCGATCGGTATCGATCTTGGTACCACCTACAGTTGTGTTGGTGTATGGCAACACGATCGT 147727 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || |||||||| || ||||| |||| || || ||||| || || || Sbjct 147726 GTTGAGATCATCGCCAATGATCAGGGTAACCGAACCACGCCTTCATACGTCGGATTCACC 147667 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || ||||| | ||||| |||||||| || || |||| Sbjct 147666 GACACTGAGCGACTTATCGGAGATGCCGCCAAGAATCA 147629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268001743997276