Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2878 248 1e-60 seq467 154 2e-32 seq3282 127 2e-24 seq3761 122 1e-22 seq3792 116 4e-21 seq1308 98.7 1e-15 seq470 98.7 1e-15 seq3359 89.7 6e-13 >seq2878 Length=397857 Score = 248 bits (274), Expect = 1e-60 Identities = 366/516 (71%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 162288 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 162347 || ||| | ||||| || ||||||||||||||| | | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 162348 CTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 162407 ||||||| ||||| | ||||| || || | || ||||||||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 162408 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAA 162467 |||||||| || || || || || ||||| | ||||| || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 162468 CTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGC 162526 || || || || || | | |||||||| ||||| ||||| || || || |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 162527 TGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586 ||| || || |||||||||||| |||||||| |||||||| ||||| || ||||| Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 162587 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 162646 || || || || ||||| || |||| | || || | ||||| || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 162647 GACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTC 162706 ||| |||| || || || |||||||| || || || | | |||| ||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 162707 TGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACAC 162766 || ||||| || | || ||||| ||||| | | |||||||| || |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 162767 TTTTAAAGCATTTGACTCCACACAGGAGGAAGAAAC 162802 || || ||| || | || ||| ||||| ||| Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCAGTGGGAAGCAAC 140803 >seq467 Length=265627 Score = 154 bits (170), Expect = 2e-32 Identities = 136/170 (80%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757 ||||| ||||| |||||| | |||||||| ||||| ||||| ||| | ||||| ||||| Sbjct 211267 AGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAA 211208 Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 161817 ||| || || ||||| ||||| || || ||||||||||| ||||| |||||||| Sbjct 211207 GGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 211148 Query 161818 ATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||| || || || ||||||||||||||||| ||| | ||||||| ||| Sbjct 211147 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 161671 GGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAAC 161730 || || ||||| ||||| | || | ||||| ||||| |||||| | |||||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 161731 TTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTC 161790 || ||||| ||| | ||||| ||||| ||| || || ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 161791 AACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCAC 161838 ||||||||| ||||| |||||||| ||||| || || || |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 161024 CCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTT 161083 |||| ||||||| || | || ||||| |||||||| ||||||||| |||| ||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 161084 CTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGC 161143 || ||||||||| | ||||||||||| || |||||||| || | | || |||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 161144 TCTACAACGGTGGTCCTTTCCAACT 161168 | |||||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq3792 Length=366655 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 161229 TTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGC 161288 ||||||| | || ||||||||||||||| || ||||| || ||||| || ||||| || Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 161289 GAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCT 161348 | ||| || ||| || |||| ||| | |||||||| |||||| || | |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 161349 GGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCA 161387 || ||||||||||| ||||| | |||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq1308 Length=500924 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 161764 GTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 161823 || || ||||| ||||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 59760 GTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 59701 Query 161824 GAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 || || || ||||||||||||||||| ||| | ||||||| ||| Sbjct 59700 GAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq470 Length=504015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||| | ||||| ||||| ||||| || || || ||||| |||||||| || Sbjct 204296 TACATCTTGGACGCCGCTGAAGAAGCCGGACTCTCTCTGCCCTACTCTTGCCGTGCCGGT 204237 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||| || || || || ||||| || | ||||| || |||||| ||||||||| Sbjct 204236 GCTTGCTCTTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCC 204177 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 ||| ||||||||||||| || ||| || ||| | ||||| || Sbjct 204176 TTCTTGGACGATGACCAGATGGATGAGGGATTCGTCCTGACCTG 204133 >seq3359 Length=14268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 157686 TTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTT 157745 |||| ||| |||||||||| ||||||||||| ||| |||||| ||| | |||||||||| Sbjct 5830 TTTA-GGGATGTAGCGCAGTTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCGCAGGTT 5888 Query 157746 CGAATCCTGTCACCCCGAC 157764 |||||||||||| ||| || Sbjct 5889 CGAATCCTGTCATCCCTAC 5907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547718874622920