Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq3666 86.0 2e-12 >seq3666 Length=1232 Score = 86.0 bits (94), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 5657 GAGTGCGCAACAATAACAGCATCCCAATCACCAGTAGCAATGCGAGCAAATAAGCGCTTA 5716 ||||| | | ||||| || || |||| || || ||||| || || | || ||| Sbjct 1232 GAGTGGCCGATAATAATCGCGTCGTAATCGCCGGTGGCAATCCGTGCGCAGAACGTCTTC 1173 Query 5717 CGGTTGCCTT--TCTCAAAGTCCTTCTTGGTGGCCGCCAGCACATTTGCGCCAGGGTAAA 5774 ||||| ||| | ||||| |||||||||||||| ||||||| || ||| || || | Sbjct 1172 CGGTT--CTTCGTTTCAAAATCCTTCTTGGTGGCGACCAGCACGTTCGCGGACGGATAGA 1115 Query 5775 GTTTGGTGAAGTCCTCTGCCCATTGCCCGACCAAGTGATTAGGAACAACAAACAT 5829 | | || ||| ||||||||||| || || |||||||||||||| ||||| Sbjct 1114 GCATCAAAAATTCCGCTGCCCATTGCTCGGTCAGATGATTAGGAACAACCAACAT 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123654724931336