Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3792 111 5e-20 seq467 109 2e-19 seq3282 87.8 5e-13 seq1308 86.0 2e-12 >seq3792 Length=366655 Score = 111 bits (122), Expect = 5e-20 Identities = 113/142 (80%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 18317 CATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 18376 |||||||||||||||||| ||||| | ||||||||| || |||||||| ||||| || Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 18377 AAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACA 18434 || ||| || | | ||||| || | || | ||||| || ||||| || ||||| |||||| Sbjct 281901 AATAGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCAGCAACTGGAGCTGAATATGCAACA 281844 Query 18435 CAAATCCACGGGCGCATACCTA 18456 |||||| || |||||||||| Sbjct 281843 GCAATCCAAGGACGCATACCTA 281822 >seq467 Length=265627 Score = 109 bits (120), Expect = 2e-19 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||| ||||| || ||||||||||| | |||||||| Sbjct 211106 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTT 211165 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGG 17952 ||| | ||||| | |||||||| || | || | ||| | ||| | |||| | Sbjct 211166 AGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGA-CTGTCAACAACAG 211224 Query 17953 ATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCC 18001 ||||||| ||||| || ||||| | || |||||||||||| ||| || Sbjct 211225 ATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3282 Length=366234 Score = 87.8 bits (96), Expect = 5e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 17856 TGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAGCC 17915 ||||| ||||| || ||||||||||| | ||||||||||| | ||||| | |||||| Sbjct 191052 TGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGCC 190993 Query 17916 CATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTTGAAGTTGAATCCATT 17974 || || | || | ||| | ||| | |||| |||||||| ||||| || ||||| Sbjct 190992 CAAGTGTTAATTACACGACCTTGA-CTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 17975 GAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019 | || |||||||||||| ||| || | || |||| ||| || Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAAT 190889 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||| ||||| || ||||||||||| | |||||||| Sbjct 59665 AGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTT 59724 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGT 17920 ||| | ||||| | |||||||| || Sbjct 59725 AGCACGGTTGATAATATCAGCCCAAGT 59751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151310966199878