Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2878 282 5e-71 seq467 140 4e-28 seq3282 123 3e-23 seq3761 120 4e-22 seq1308 104 3e-17 seq263 89.7 7e-13 seq434 82.4 1e-10 >seq2878 Length=397857 Score = 282 bits (312), Expect = 5e-71 Identities = 353/484 (73%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| |||||||| ||||||||||||| | | ||| ||||| ||||| ||||||| || Sbjct 140771 GAATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTCTCAACAGTAGCACCGTGAAT 140712 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAG 102188 ||| | | || || | || | | || || ||||||||||||||||||||||| | Sbjct 140711 TGCGCATAAAAGAGCAGCACCTAAAACTCCAGCGACACCCATCATATGGAATGGGTTTAA 140652 Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 ||||||||||| ||||| || | || || | |||||||| || || || |||||||| Sbjct 140651 AGTCCAGTTATGAAAGCCTTGAAAAAAAAGAATAAATCTAAAAATTGCAGCTACACCAAA 140592 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAA 102308 || ||||| ||||||| || ||||| | |||||| || ||||| ||| ||||| Sbjct 140591 ACTAGGTGCAAAAAACCAACCTGATTGTCCTAAAGGATAAATAAGAAAAACAGATACAAA 140532 Query 102309 AACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGC 102368 |||||| ||||| ||||| |||||||| ||||| || ||||| | | || | ||||| Sbjct 140531 AACAGCAATAGGTCCAGAAAACGCAATTGCATTATAAGGACGTAATTGAACAGATCTAGC 140472 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || ||||| || | ||| || || || | |||||||||||| || ||||| ||||| Sbjct 140471 AAGTTCAAATTGTCGTAACATAAAGCCTATTAAGGCAAATGCACCATGAAGAGCTACAAA 140412 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 || ||| | || || | |||| ||| | ||||| ||||| |||||||| ||||| Sbjct 140411 AGTCCATAAACCACCTAATTGGCACCAACGAGTAAAATCACCTTGTGCTTCAGGTCCCCA 140352 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 | || || | ||||||| | | | | || || || || ||||| || || | || Sbjct 140351 TAATAATAGTAAAGAATGAGCTAAACTATTTGCTGGAGTAGAAACAGCGGCAGTTAAAAA 140292 Query 102549 ATTA 102552 |||| Sbjct 140291 ATTA 140288 >seq467 Length=265627 Score = 140 bits (154), Expect = 4e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| | ||| || |||||||||||||||||||| || ||||| ||||||||||| | Sbjct 211102 CAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAA 211161 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||||| || || ||||| ||||| | |||||||| |||| |||| | Sbjct 211162 GGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACAA 211221 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 || ||||| ||||| || || || | |||||| ||||| ||||| | ||| Sbjct 211222 CAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3282 Length=366234 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 103195 GTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGAACGTCTGC 103254 |||||||||||| || ||||| ||||||||||| || ||| ||||||| || || || Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 103255 CCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCGTT 103314 ||| ||||| | |||||||| |||| |||| | || ||||| ||||| || || || Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 103315 CAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACC 103362 | |||||| ||||| ||||| | ||| | || || ||||| ||||| Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 >seq3761 Length=231418 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 103864 AAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGG 103923 ||||| | ||||||||||||| |||| ||| ||||||| ||| || ||||||||||| || Sbjct 108316 AAGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGG 108257 Query 103924 ATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTT 103983 |||||||| | ||| || || |||| |||| || |||||||| |||||||| || Sbjct 108256 GTAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATT 108197 Query 103984 ACCGTACATGAGTGAACCAGCGACGG 104009 ||||| | || ||||||| |||| Sbjct 108196 TCCGTAAAGAAGAGAACCAGATACGG 108171 >seq1308 Length=500924 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| | ||| || |||||||||||||||||||| || ||||| ||||||||||| | Sbjct 59661 CAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAA 59720 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGA 103279 | ||| ||||||| || || ||||| ||||| | |||||||| ||| Sbjct 59721 GGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGA 59770 >seq263 Length=1363 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 164341 CATTTGCTTCTTTCAGAATGTTGAACCCTTCGGCGTATGCTTGCATGATACCATACTCAA 164400 |||| || | ||||||| |||||| |||||||| || || ||||| || || || || | Sbjct 1160 CATTCGCCTGCTTCAGAACGTTGAAGCCTTCGGCATAGGCCTGCATCATGCCGTATTCGA 1219 Query 164401 CACCGTTATGGACCATCTTCACAAAGTGACCTGCGCC 164437 ||||||||||||||||| || |||||||| ||||| Sbjct 1220 TGCCGTTATGGACCATCTTGACGAAGTGACCGGCGCC 1256 >seq434 Length=438060 Score = 82.4 bits (90), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 102163 ACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGA---AGAGT 102219 ||| |||||||||| |||||||| | ||| ||||||| ||| | || | | ||| | Sbjct 406969 ACAACCATCATATGAAATGGGTTTAAAGTCTAGTTATGAAAGACTTGGAAAATAAAGATT 407028 Query 102220 AGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCG 102279 | |||||||| || || || ||| |||| || ||||||||||||| || | | | Sbjct 407029 A--AATCTAAAAATTGCAGCTACATCAAAACTAGGTGCAAAGAACCAACCTGATTTTACT 407086 Query 102280 AGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAA 102329 | | ||| || ||||| | | | ||||||||| |||| ||||| || Sbjct 407087 AAAATATAAATAAGAAAGATAGATAAAAAAACAGCAGTAGGTCCAGAAAA 407136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633480839427960