Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq467 127 6e-25 seq3282 120 9e-23 seq3761 100 8e-17 seq1308 86.0 2e-12 >seq467 Length=265627 Score = 127 bits (140), Expect = 6e-25 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||||||||| ||||| || |||||||| || || | |||||||| ||||| Sbjct 211112 GTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 211171 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||| | ||| |||||||| ||||| || || | || | | | | | ||||||||| Sbjct 211172 GTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTT 211231 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628 |||||| |||||||| |||||||||||||| || Sbjct 211232 AAAGTTAAAACCATTTAAGTTGAAAGCCATAGT 211264 >seq3282 Length=366234 Score = 120 bits (132), Expect = 9e-23 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 21491 GTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGC 21550 ||| ||||| || |||||||| || || | |||||||| |||||||| | ||| ||||| Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 21551 CCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATT 21610 ||| ||||| || || | || | | | | | ||||||||||||||| |||||||| Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 21611 CAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCT 21659 |||||||||||||| || | || | |||| ||||||||||||| Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACCT 190885 >seq3761 Length=231418 Score = 100 bits (110), Expect = 8e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 |||| | | ||||| |||||||||| ||||||||||| | ||||||||||||||| ||| Sbjct 108315 AGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGG 108256 Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280 |||||||||| ||||| || | | | |||| | || || || |||||||| || Sbjct 108255 TAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTT 108196 Query 22281 CCATACAACAGGGAGCCAGCGACGG 22305 || || | || || |||| |||| Sbjct 108195 CCGTAAAGAAGAGAACCAGATACGG 108171 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||||||||| ||||| || |||||||| || || | |||||||| ||||| Sbjct 59671 GTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 59730 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCAC 21565 ||| | ||| |||||||| ||||| || || Sbjct 59731 GTTGATAATATCAGCCCAAGTGTTAATTAC 59760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200817257860