Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2878 143 3e-29 seq467 132 6e-26 seq3761 120 4e-22 seq3792 118 1e-21 seq164 114 1e-20 seq3282 107 2e-18 seq2371 107 2e-18 seq60 87.8 2e-12 seq1308 86.0 7e-12 >seq2878 Length=397857 Score = 143 bits (158), Expect = 3e-29 Identities = 275/400 (69%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || |||| || || ||||| ||||| || |||| | || ||||| Sbjct 140749 TCTTCAAATAAAGTATTCTCAACAGTAGCACCGTGAATTGCGCATAAAAGAGCAGCACCT 140690 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | | ||| || ||||||||||| || ||||| || || || ||| || || ||||| Sbjct 140689 AAAACTCCAGCGACACCCATCATATGGAATGGGTTTAAAGTCCAGTTATGAAAGCCTTGA 140630 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | ||| | | ||| ||||| || ||||| || ||||| || ||||||| Sbjct 140629 AAAAAAAGAATAAATCTAAAAATTGCAGCTACACCAAAACTAGGTGCAAAAAACCAACCT 140570 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAA 123510 || |||| ||||| || ||||| | | || || || || ||| |||| || Sbjct 140569 GATTGTCCTAAAGGATAAATAAGAAAAACAGATA-CAAAAACAGCAATAGGTCCAGAAAA 140511 Query 123511 TGCGAGTGCGTTGTAAGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCA 123569 || | ||| || ||||| | |||| ||| || || | |||||||||| | || Sbjct 140510 CGCAATTGCATTATAAGGACGTAAT-TGAACAGATCTAGCAAGTTCAAATTGTCGTAACA 140452 Query 123570 TGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTT 123629 | || ||||| | |||| | ||||| | |||||||| |||||| ||| || | || Sbjct 140451 TAAAGCCTATTAAGGCAAATGCACCATGAAGAGCTACAAAAGTCCATAAACCACCTAATT 140392 Query 123630 GTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCA 123669 | |||||||| || |||||||||||||||||||| Sbjct 140391 GGCACCAACGAGTAAAATCACCTTGTGCTTCAGGTCCCCA 140352 >seq467 Length=265627 Score = 132 bits (146), Expect = 6e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| |||| |||||| ||||||||||| || || | ||||||||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | || |||| |||| || | | || | | ||| Sbjct 211158 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCA 211217 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 ||||| |||||||||||||| |||||||| |||||||| ||||| |||| |||||| Sbjct 211218 ACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3761 Length=231418 Score = 120 bits (132), Expect = 4e-22 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 124745 TAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAG 124804 ||||||||||| || ||||||||||||||||||| || |||||||| || ||||||||| Sbjct 108309 TAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGGTAGAAG 108250 Query 124805 TGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATAT 124864 |||| |||||||| || | |||| || |||||||| |||||||| || || || Sbjct 108249 TGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGTA- 108191 Query 124865 AAGAA-AGAACCCGCTAC 124881 ||||| |||||| | ||| Sbjct 108190 AAGAAGAGAACCAGATAC 108173 >seq3792 Length=366655 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 |||| ||| ||| || ||||||||||| |||||||| | |||||||| || ||||| Sbjct 281972 TGGAGAACAGTCATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAA 281913 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||||| ||||| | ||||| ||||| ||||||| ||||| |||||| Sbjct 281912 CTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAA 281853 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTA 124677 || |||||| |||||||||||||| ||||| | ||| Sbjct 281852 TATGCAACAGCAATCCAAGGACGCATACCTAAACGGTA 281815 >seq164 Length=700310 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 122875 GTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTGGTCAACAGA 122934 ||| || | ||| | || || ||||||||||||| ||| ||||| || || || || Sbjct 564033 GTTTCCACGTGGCAGAACCTCCTCTGGGAATACAAGATTTTCATGAGGCTGATCTTGAGC 563974 Query 122935 TGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAA 122994 || |||||| ||||| || |||||||| | | ||| || || ||||| ||||| || || Sbjct 563973 TGCCATCCAAGCTCTAATACCTTCATTTAATAAAATATTTTTTGTATAAAAAGTTTCAAA 563914 Query 122995 CTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGC 123042 ||||| || |||||||| | || ||||| || ||||| ||||| || Sbjct 563913 TTCTGGATCCTCTGCTGCACGAATTTCTTGGGAAACAAAATCGTAGGC 563866 >seq3282 Length=366234 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 124069 GTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACC 124128 ||| || || | ||||||||||||||||||||| | ||| || | ||| | || |||| | Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGC 190994 Query 124129 CCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATT 124188 ||| || | | || | | |||||||| |||||||||||||| |||||||| Sbjct 190993 CCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATT 190934 Query 124189 CAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCA 124230 |||||||| ||||| |||| |||||| | || || ||||| Sbjct 190933 TAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCA 190892 >seq2371 Length=186017 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 124803 AGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCAT 124862 |||||| |||||||| || | |||| || |||||||| |||||||| || || | Sbjct 41141 AGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGT 41082 Query 124863 ATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCA 124921 | ||||| |||||| | ||| ||||| | ||| ||||| ||||| |||||||| |||||| Sbjct 41081 A-AAGAAGAGAACCAGATACAGGTTCACGGATACCGTCAATATCTACAGGAGGAGCTGCA 41023 Query 124922 ATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAA 124959 ||||| |||| ||||| || | |||||| | ||| Sbjct 41022 ATAAAAGCAATAATGAATACTGAAGTTGCTGTTAATAA 40985 >seq60 Length=300730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 137825 CTCAGACTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGC 137884 |||| |||||| || || | ||||| |||||| | ||||||||||| | |||||||| Sbjct 162703 CTCACTCTCTGTCGGCTCGATCATCAAAGTTCCGGAGACAGGCCACGACATGGTAGGTGC 162644 Query 137885 ATGAAATCCATAGTCCATAAGTCTCTTTGCTATATCTTCTGCT 137927 |||| |||| || ||||| |||| ||| || | |||||| ||| Sbjct 162643 ATGATATCCGTAATCCATGAGTCGCTTCGCCACATCTTCAGCT 162601 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| |||| |||||| ||||||||||| || || | ||||||||||||||||||| Sbjct 59657 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 59716 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGT 124134 || | ||| || | ||| | || |||| |||| || Sbjct 59717 CCAAGGTTAGCACGGTTGATAATATCAGCCCAAGT 59751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578968458545240