Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2878 284 2e-71 seq3792 138 2e-27 seq3761 113 6e-20 seq2371 102 1e-16 seq467 98.7 1e-15 seq434 98.7 1e-15 seq3282 89.7 7e-13 >seq2878 Length=397857 Score = 284 bits (314), Expect = 2e-71 Identities = 355/484 (73%), Gaps = 2/484 (0%) Strand=Plus/Minus Query 23751 AAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATA 23810 || |||||||| || ||||||||| | | |||||||| |||||| | || ||||| Sbjct 140770 AATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTCTCAACAGTAGCACCGTGAATT 140711 Query 23811 GCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGC 23870 || | | ||| || | || | | ||||| || |||||||||||||| ||||| | Sbjct 140710 GCGCATAAAAGAGCAGCACCTAAAACTCCAGCGACACCCATCATATGGAATGGGTTTAAA 140651 Query 23871 GTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAA 23930 ||||||||||||||||| || | || |||| || || ||||| || || ||||| ||| Sbjct 140650 GTCCAGTTATGAAAGCCTTGAAAAAAAAGAATAAATCTAAAAATTGCAGCTACACCAAAA 140591 Query 23931 CTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAAT 23990 || || ||||| |||||| ||| ||||| |||||||| || || || ||||| || || Sbjct 140590 CTAGGTGCAAAAAACCAACCTGATTGTCCTAAAGGATAAATAAGAAAAACAGATACAAAA 140531 Query 23991 ACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGC 24049 ||||||||||| |||||||| ||||| ||||| || ||||| | | || ||| | || Sbjct 140530 ACAGCAATAGGTCCAGAAAACGCAATTGCATTATAAGGACGTAATTGAA-CAGATCTAGC 140472 Query 24050 CAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAA 24109 |||||||| || ||||||||||| ||||| | ||||| ||||| || ||||| ||||| Sbjct 140471 AAGTTCAAATTGTCGTAACATAAAGCCTATTAAGGCAAATGCACCATGAAGAGCTACAAA 140412 Query 24110 GGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCA 24169 | ||| | || || | |||| ||| || ||| || ||||| | ||||| ||||| Sbjct 140411 AGTCCATAAACCACCTAATTGGCACCAACGAGTAAAATCACCTTGTGCTTCAGGTCCCCA 140352 Query 24170 AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAA 24229 | || || | ||||||| | | | | || || || || ||||| || || | ||| Sbjct 140351 TAATAATAGTAAAGAATGAGCTAAACTATTTGCTGGAGTAGAAACAGCGGCAGTTAAAAA 140292 Query 24230 GTTA 24233 ||| Sbjct 140291 ATTA 140288 >seq3792 Length=366655 Score = 138 bits (152), Expect = 2e-27 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27204 CTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAA 27263 ||||| ||| |||| | || ||||||||||||||||| | ||||||| | || ||||| Sbjct 281973 CTGGAGAACAGTCATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAA 281914 Query 27264 AGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGA 27323 | |||||||| | ||| |||| | ||| || ||| | |||||||| |||||||| || Sbjct 281913 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGA 281854 Query 27324 ATATGCTACACAGATCCATGGACGCATACCTAAACGATA 27362 |||||| ||| ||||| ||||||||||||||||| || Sbjct 281853 ATATGCAACAGCAATCCAAGGACGCATACCTAAACGGTA 281815 >seq3761 Length=231418 Score = 113 bits (124), Expect = 6e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27424 AGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGG 27483 |||| | ||||||||||||| |||||||| ||||| | || || |||||||| || ||| Sbjct 108315 AGTTCGTAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGG 108256 Query 27484 TAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTG 27543 |||||||| | |||||| || || | || | || ||||||||||||||||| || Sbjct 108255 TAGAAGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTT 108196 Query 27544 CCATACATAAGTGAACCAGCAACGG 27568 || || | ||| ||||||| |||| Sbjct 108195 CCGTAAAGAAGAGAACCAGATACGG 108171 >seq2371 Length=186017 Score = 102 bits (112), Expect = 1e-16 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 ||||||||||||||||| || || || | ||| ||||||| || |||||||| |||||| Sbjct 41106 GCACCAGAAATGATGTTATTTCCGTAAAGAAGAGAACCAGATACAGGTTCACGGATACCG 41047 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAA 27641 |||||||| || || || ||||| || || || | |||||| | || |||||||| ||| Sbjct 41046 TCAATATCTACAGGAGGAGCTGCAATAAAAGCAATAATGAATACTGA-AGTTGCTGTTAA 40988 >seq467 Length=265627 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 26712 TACAGGAGTTGACTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTG 26771 ||||| || | ||| ||||||| | || | || || || || ||||| | ||| || Sbjct 211085 TACAGCAGGAGCTTCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATG 211144 Query 26772 AATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACG 26831 || || || | ||||| ||||||||||| || || ||||||||||| | ||||| Sbjct 211145 CATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGCCCAAGTGTTAATTACACG 211204 Query 26832 ACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGT 26891 ||| || |||| ||||| || || ||||| ||||| || | ||||||||||| || Sbjct 211205 ACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGT 211264 Query 26892 G--GATAC 26897 | ||||| Sbjct 211265 GCTGATAC 211272 >seq434 Length=438060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 23848 CCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGA-AGAGAAGGAAC 23906 |||||||||| || ||||| | ||| ||||||||||| | |||| | | ||| || Sbjct 406973 CCATCATATGAAATGGGTTTAAAGTCTAGTTATGAAAGACTTGGAAAATAAAGATTAAAT 407032 Query 23907 CTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGA 23966 || ||||| || || ||| | ||||| || |||||||||||| ||| | | | ||| | Sbjct 407033 CTAAAAATTGCAGCTACATCAAAACTAGGTGCAAAGAACCAACCTGATTTTACTAAAATA 407092 Query 23967 TAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAA 24010 || || || || | ||| | || |||||| |||| |||||||| Sbjct 407093 TAAATAAGAAAGATAGATAAAAAAACAGCAGTAGGTCCAGAAAA 407136 >seq3282 Length=366234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26755 TGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCC 26814 || ||||| | ||| || || || || | ||||| ||||||||||| || || ||| Sbjct 191052 TGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGCC 190993 Query 26815 CAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTG 26874 |||||||| | |||||||| || |||| ||||| || || ||||| ||||| || Sbjct 190992 CAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATTT 190933 Query 26875 AGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCC 26921 | ||||||||||| ||| | ||| | || || ||||| || || Sbjct 190932 AAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665459985620840