Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1018 150 2e-31 seq594 89.7 6e-13 >seq1018 Length=294332 Score = 150 bits (166), Expect = 2e-31 Identities = 257/369 (70%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| || |||||| ||||| || || ||| | || ||||| Sbjct 234368 CCCGGAACAGGAAAGACTCTTCTCGCCAAGGCCATTGCTGGCGAAGCTGGAGTTCCATTT 234427 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | |||| | | || ||||| ||||||||||||||||| || | | || Sbjct 234428 TTCTCAATT-TCTGGTTCTGAGTTCGTGGAAATGTTTGTTGGTGTGGGAGCATCACGAGT 234486 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | |||||||| | | ||| |||||| || || ||||| ||| | |||||||| Sbjct 234487 GAGGGATCTCTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTGTTCGTGGATGAGAT 234546 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGA 175550 |||||| || || | ||| | | | ||| ||| || |||||||||||||| Sbjct 234547 TGATGCCGTCGGAAGGCAGAGGGGTACCGGTATCGGTGG---AGGCAATGACGAGAGAGA 234603 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGT 175610 |||||| | || || || || || || |||||||| ||||| | | || || ||| | Sbjct 234604 ACAAACTCTGAACCAGCTTCTGACTGAAATGGATGGATTTGAGGGTAACACCGGAATTAT 234663 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCG 175670 ||| |||| ||||| ||||| | |||||||| || | || || ||||| || || || Sbjct 234664 TGTTGTTGCCGCCACCAATCGGGCTGATATCCTCGACGCTGCTCTGCTTCGACCTGGACG 234723 Query 175671 TTTTGATCG 175679 |||||||| Sbjct 234724 ATTTGATCG 234732 >seq594 Length=317990 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 75929 TACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCA 75988 ||| |||| || || ||| |||||||||||| |||| |||| || |||||| || Sbjct 155879 TACCAGGACGCATGCAACCGGAAGAGTAACCAGCAGAACCTGGGGACGATCAAGTCATCC 155820 Query 75989 AATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTG 76048 ||||| || ||||| ||| | |||||||| | ||||| | ||| || ||||| ||| Sbjct 155819 AATCTATGTACGGAGATTGTGGAGTACACCGCACCCGATGAAATGGCGGTGTGCAACTTG 155760 Query 76049 GCATCAATCGCCCTTCC 76065 || ||||| ||||| || Sbjct 155759 GCGTCAATTGCCCTACC 155743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596538749894560