Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq467 122 1e-22 seq3282 105 8e-18 seq3761 98.7 1e-15 seq2371 98.7 1e-15 >seq467 Length=265627 Score = 122 bits (134), Expect = 1e-22 Identities = 135/178 (76%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||||||||| ||||||||||| || || | ||||||||||||||||||| Sbjct 211098 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATA 211157 Query 7942 CCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACAT 7999 || | ||| || | ||| ||||| ||| |||| || ||| | ||| | | | Sbjct 211158 CCAAGGTTAGCACGGTTGATAATA--TCAGCCCAAGTGTTAATTACACGACCTTGACTGT 211215 Query 8000 CAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 ||||||| ||||||||||||||||| || || | ||| || ||||| |||| ||||| Sbjct 211216 CAACAACAGATTGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3282 Length=366234 Score = 105 bits (116), Expect = 8e-18 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 7911 GTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTT--TAATACGTCA 7968 ||| || || | ||||||||||||||||||||| | ||| || | ||| ||||| ||| Sbjct 191053 GTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATA--TCA 190996 Query 7969 CCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCG 8028 |||| || ||| | ||| | | |||||||| ||||||||||||||||| || Sbjct 190995 GCCCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCA 190936 Query 8029 TTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACAC 8077 || | ||| || ||||| |||| ||||| | || ||| ||||||| || Sbjct 190935 TTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATAC 190887 >seq3761 Length=231418 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| ||||| |||||||| ||||| | | |||||||||||||| || |||||| Sbjct 108309 TAAGGACCACCGTTGTACAACCATTCATCAACAGAAGCAGCTTCCCAAATAGGGTAGAAG 108250 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATA 8705 ||||| || ||||| || | |||| | ||||||||| |||||||| ||||| || Sbjct 108249 TGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGTA 108191 >seq2371 Length=186017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 8645 AGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCAT 8704 ||||||| || ||||| || | |||| | ||||||||| |||||||| ||||| | Sbjct 41141 AGTGTAAACCGATAGCTGCAGAGGTAGGAATAATAGCACCAGAAATGATGTTATTTCCGT 41082 Query 8705 ACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAA 8764 | | | ||||| | ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct 41081 AAAGAAGAGAACCAGATACAGGTTCACGGATACCGTCAATATCTACAGGAGGAGCTGCAA 41022 Query 8765 TAAATGC 8771 |||| || Sbjct 41021 TAAAAGC 41015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615830552215640