Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2878 233 2e-56 seq164 149 7e-31 seq467 145 9e-30 seq3282 118 1e-21 seq595 118 1e-21 seq3792 114 1e-20 seq1308 111 2e-19 seq3761 104 3e-17 seq2067 96.9 4e-15 seq1018 96.9 4e-15 seq2371 89.7 6e-13 >seq2878 Length=397857 Score = 233 bits (258), Expect = 2e-56 Identities = 343/483 (71%), Gaps = 2/483 (0%) Strand=Plus/Plus Query 167185 AACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTT 167244 || ||| | ||||| || ||| |||||||||| || | | | |||||||||||| | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 167245 CTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGG 167304 ||||||| |||||| | ||||| ||||| | ||| |||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 167305 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAA 167364 ||||||| || || || || || ||||| | || || || ||| | ||||| |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 167365 CTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGC 167423 |||||| | ||| | | | ||||| || ||||| ||||| || ||||| |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 167424 TGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCC 167483 ||| || || ||||| ||| | ||||| | || ||| | ||||| ||||| || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 167484 GTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTG 167543 || || || || || || || |||| | || || | ||||| || || ||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 167544 GACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTC 167603 ||| | || ||||| |||||||||||||| || || | | |||| ||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 167604 TGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACAC 167663 ||||| || |||| ||| || ||||||||||| | |||||||||||| |||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 167664 TTT 167666 || Sbjct 140768 ATT 140770 >seq164 Length=700310 Score = 149 bits (164), Expect = 7e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 167845 AATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTT 167904 ||| | ||||| |||||||| ||||| ||||| || | || || ||||||||||| ||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 167905 GAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCT 167964 |||||||| ||||| ||||| || | | ||||||||| || |||| ||| | ||| || Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 167965 ATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAAC 168021 ||||| |||||||| || |||| ||||||||||| ||||| ||||| || ||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq467 Length=265627 Score = 145 bits (160), Expect = 9e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652 ||| ||||| |||||| | || ||||| ||||| ||||| || | |||| |||| || Sbjct 211265 CACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGG 211206 Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTAT 166712 |||||| | ||||| ||||| ||| || | ||||| ||| || |||||||||||||| Sbjct 211205 TCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTAT 211146 Query 166713 GCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 |||||| |||||||| ||||||||||| || ||| | ||||||| ||| Sbjct 211145 GCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3282 Length=366234 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 166564 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 166623 || || ||||| || || | || || ||| ||||| |||||| | || ||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 166624 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTT 166683 || ||||| || | |||| |||| |||||||| | ||||| ||||| ||| || | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 166684 AACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACAC 166731 ||||| ||| || |||||||||||||||||||| |||||||| ||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq595 Length=533780 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 167782 ATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCT 167841 ||| ||||||| || || | ||| | |||| | ||||| | | ||| | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 167842 CTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAG 167901 | ||| | ||||| |||||||| ||||| ||||| || | || || ||||||||||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 167902 TTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCA 167961 ||||||||||| ||||| ||||| || | | ||||||||| || |||| ||| | ||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 167962 CCTATCGATCAACCTCATGA 167981 || ||||| |||||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq3792 Length=366655 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 166122 TTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGC 166181 ||||||| ||||||||||||| ||||| |||||| || ||||| ||||| |||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 166182 GAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACT 166241 | ||| || ||| | | || ||| | |||||||| |||||||| || | ||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 166242 CGGAATCTCAGGAACATTCAACTACATG 166269 || ||||| || || ||||| | |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATG 281961 >seq1308 Length=500924 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 166647 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGA 166706 ||| |||||||| | ||||| ||||| ||| || | ||||| ||| || |||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 166707 AGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 |||||||||||| |||||||| ||||||||||| || ||| | ||||||| ||| Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq3761 Length=231418 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 165917 CCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTT 165976 |||| |||||||||| | || || || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 165977 CCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGC 166036 | || || ||| |||||||||| || || |||||||| || || |||| |||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 166037 TCTATAACGGTGGTCCTTTCCAACT 166061 | || ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq2067 Length=7856 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||| |||||||||| || ||||| ||| ||||||| ||||||||||||||||||||| Sbjct 3955 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAAT 3896 Query 18188 CCTACCTGGGGAGTTG 18203 |||||||| |||| || Sbjct 3895 CCTACCTGAGGAGATG 3880 >seq1018 Length=294332 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||||| |||||||||| || ||||| ||| ||||||| ||||||||||||||||||||| Sbjct 216835 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAAT 216776 Query 18188 CCTACCTGGGGAGTTG 18203 |||||||| |||| || Sbjct 216775 CCTACCTGAGGAGATG 216760 >seq2371 Length=186017 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 165848 CAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGC 165906 |||||||| || | ||||| | || || || || ||||| ||||| || || ||||| Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 165907 ATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTT 165966 ||||||||||| || |||||||||| | || || || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 165967 GTTCCCTCTTCCAACGCAATTGGTCTACACT 165997 |||| | || || || ||| |||||| Sbjct 41111 ATTCCTACCTCTGCAGCTATCGGTTTACACT 41141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561218976462800