Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq467 127 6e-25 seq3282 120 9e-23 seq3761 100 8e-17 seq1308 86.0 2e-12 >seq467 Length=265627 Score = 127 bits (140), Expect = 6e-25 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||||| |||||||| ||||||||||||||| | | | | | || Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 | || || ||||| |||||||| ||| | |||||||| |||||||| | || || ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 ||||| || ||||| ||||||||||| || ||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGAC 211112 >seq3282 Length=366234 Score = 120 bits (132), Expect = 9e-23 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 42028 AGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAA 42087 ||||||||||||| |||| | || | || |||||||||||||| |||||||| || Sbjct 190885 AGGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAA 190944 Query 42088 CTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCT 42147 ||||||||||||| | | | | | || | || || ||||| |||||||| ||| | Sbjct 190945 CTTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTAT 191004 Query 42148 TAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACAC 42196 |||||||| |||||||| | || || |||||||| || ||||| ||| Sbjct 191005 CAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq3761 Length=231418 Score = 100 bits (110), Expect = 8e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 41382 CCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCA 41441 |||| |||| || || | || || || |||||||| || || || | |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 41442 GTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGC 41501 | || ||||| ||||||||||||| ||||||||||||||| | ||||||||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 41502 TGTACAACGGCGGTCCATTCCAACT 41526 |||||||||| ||||| | | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq1308 Length=500924 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181 || || ||||| |||||||| ||| | |||||||| |||||||| | || || |||||| Sbjct 59760 GTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 59701 Query 42182 GAGCGGAACGCACACAACTTCCCGCTTGAC 42211 || || ||||| ||||||||||| || ||| Sbjct 59700 GAACGTAACGCTCACAACTTCCCTCTAGAC 59671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207216943448