Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3282 131 5e-26 seq467 131 5e-26 seq2371 102 2e-17 seq38 84.2 6e-12 >seq3282 Length=366234 Score = 131 bits (144), Expect = 5e-26 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 43084 GGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAAC 43143 || |||||||| ||| || | || |||| |||||||| || ||||| |||||||||||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 43144 TTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTG 43203 ||||||||||| ||||||| | ||| || ||| || ||||||||||||||| | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 43204 AATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACA 43250 || ||||| |||||||| | || || ||||| || || || || || Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCA 191052 >seq467 Length=265627 Score = 131 bits (144), Expect = 5e-26 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43109 TCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATC 43168 |||| |||||||| || ||||| ||||||||||||||||||||||| ||||||| | || Sbjct 211269 TCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTC 211210 Query 43169 AGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGG 43228 | || ||| || ||||||||||||||| | || ||||| |||||||| | || | Sbjct 211209 AAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAG 211150 Query 43229 TGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 | ||||| || || || || || |||||||| || || Sbjct 211149 TTATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 211113 >seq2371 Length=186017 Score = 102 bits (112), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 || ||| | ||||| ||||| || ||||| ||||| ||||| || || ||||||||||| Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGC 42482 ||||| |||||||| || || || |||||||| |||||||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGC 41106 >seq38 Length=546171 Score = 84.2 bits (92), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 43066 GCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTT 43125 || |||||||| ||||| || ||||||| ||| || | || |||| ||||||| || Sbjct 81957 GCTGCTTGGCCAGTTGTAGGATTTTGGTTTACTGCTTTAGGTTTCAGCACTATGGATTTC 81898 Query 43126 AACTTGAATGGTTTTAACTTTAACCAATC 43154 |||||||||||||||||||||| ||||| Sbjct 81897 AACTTGAATGGTTTTAACTTTACTCAATC 81869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143525748682076