Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq467 122 3e-23 seq3282 104 7e-18 seq3792 82.4 2e-11 >seq467 Length=265627 Score = 122 bits (134), Expect = 3e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||| ||||| || ||||||||||| | || |||||| Sbjct 211107 GCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTA 211166 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | || || || || Sbjct 211167 GCACGGTTGATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTGTCAACAACAGAT 211226 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 |||||||||||||||||||||| ||| || ||||| |||| |||||| Sbjct 211227 TGGTTAAAGTTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 211273 >seq3282 Length=366234 Score = 104 bits (114), Expect = 7e-18 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25898 TGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCC 25957 ||||| ||||| || ||||||||||| | || |||||||| ||||| | | ||||||| Sbjct 191052 TGAGCGTTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAATATCAGCC 190993 Query 25958 CATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTT 26017 || || |||| || | | || || || || ||||||||||||||||||||| Sbjct 190992 CAAGTGTTAATTACACGACCTTGACTGTCAACAACAGATTGGTTAAAGTTAAAACCATTT 190933 Query 26018 AGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCC 26064 | ||| || ||||| |||| |||||| | || || | ||| || || Sbjct 190932 AAGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTAAACCAAATACC 190886 >seq3792 Length=366655 Score = 82.4 bits (90), Expect = 2e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 26359 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||| || || ||||||||||||||||| | |||||| || || ||||| ||||| || Sbjct 281961 CATGAAATTGAAAGTACCAGAGATACCTAAAGGCATACCGTCTGAGAAACTTCCTTGACC 281902 Query 26419 GAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAA 26478 | ||| || | ||||| || || ||| || | | ||| |||| |||||||||| Sbjct 281901 AATAGGGTAGATCAAGAAAACAGCAGTAGCAGCAGCAACTGGAGCTGAATATGCAACAGC 281842 Query 26479 TATCCATGGTCTCATTCCTAGTCTGTAA 26506 ||||| || | ||| |||| | |||| Sbjct 281841 AATCCAAGGACGCATACCTAAACGGTAA 281814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147704743371040