Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq467 125 8e-24 seq3761 120 4e-22 seq3792 105 8e-18 seq1308 100 3e-16 seq2371 98.7 1e-15 seq3282 93.3 5e-14 seq1921 84.2 3e-11 seq263 82.4 9e-11 >seq467 Length=265627 Score = 125 bits (138), Expect = 8e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGT 155853 || ||||| |||||| | || ||||| ||||| ||||| ||||| || ||| | ||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATG 155913 || || || ||||| || ||| | ||||| ||| |||||||||||||| ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 155914 CACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 || || ||||||||||||||||||||||| ||| | ||||||| ||| Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3761 Length=231418 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155117 CCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTT 155176 |||| |||||||| | | || || || |||||||| ||||||||| || | |||| | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 155177 CAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGT 155236 | || || ||| | |||||||| |||||||||||||| || || ||||||| |||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 155237 TGTACAATGGTGGTCCTTTCCAACTT 155262 ||||||| |||||||||| | ||||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACTT 108316 >seq3792 Length=366655 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155322 TTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGC 155381 ||||||| | || |||||||||||||| ||||||||| || || ||||| ||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 155382 GTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCT 155441 ||||| ||| | | || ||| | |||||||| |||||| || | |||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 155442 TGGTATCTCTGGTACTTTTAA 155462 ||||||||||||||||| || Sbjct 281934 AGGTATCTCTGGTACTTTCAA 281954 >seq1308 Length=500924 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || ||| | ||||| ||| |||||||||||||| ||||| || |||||| Sbjct 59751 ACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 59692 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||||||||||||||| ||| | ||||||| ||| Sbjct 59691 GCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq2371 Length=186017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 |||||| | || || ||||| || ||||||||||| ||||| ||||| |||||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTA 155173 |||||||| | | || || || |||||||| ||||||||| || | |||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTA 41117 >seq3282 Length=366234 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||| | || ||||| ||||| ||||| ||| Sbjct 190898 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCT 190957 Query 155836 GTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGT 155895 || || ||| | ||| || || || ||||| || ||| | ||||| ||| Sbjct 190958 GTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAAC 191017 Query 155896 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCAC 155931 |||||||||||||| ||||| || |||||||||||| Sbjct 191018 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1921 Length=72791 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 155896 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||||||||||||| ||||| || ||||||||||||||||||||||| ||| | |||||| Sbjct 54767 CTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTAGCTGCT 54826 Query 155956 G 155956 | Sbjct 54827 G 54827 >seq263 Length=1363 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 147116 CCTGCAGAACGTGGGTGGTTGCATTGTGGTCCTGCAGGTGCAGGTCACTTCGTAAAGATG 147175 || || ||||| || | ||||||| || || || || ||||||||||| |||||| Sbjct 1292 CCCGCCGAACGCGGTTATCTGCATTGCGGCCCGAGCGGCGCCGGTCACTTCGTCAAGATG 1233 Query 147176 GTTCACAATGGGATTGAATATGGAATCATGCAAGCATATGCAGAAGGTTTTAATATTCTT 147235 || || || || || ||||| || || ||||| || ||||| ||||| || || |||| Sbjct 1232 GTCCATAACGGCATCGAATACGGCATGATGCAGGCCTATGCCGAAGGCTTCAACGTTCTG 1173 Query 147236 AAAGAGGCAAATG 147248 || |||| |||| Sbjct 1172 AAGCAGGCGAATG 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584804956709720